HMDB MS search - search by masses on HMDB online bank

Our project

The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.

HMDB MS search - search by masses on HMDB online bank

Tool using the HMDB Library Search.

Galaxy

Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

Homepage: https://galaxyproject.org/

Dependencies using Conda

Conda is package manager that among many other things can be used to manage Python packages.

#To install miniconda2
#http://conda.pydata.org/miniconda.html
#To install the tool dependencies using conda:
conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
#To set an environment:
conda create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template`
#To activate the environment:
. activate tool-bank-hmdb

Travis

Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!

Historic contributors

• Franck Giacomoni @fgiacomoni - French Metabolomics and Fluxomics Infrastructure (MetaboHUB) - La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)
• Marion Landi - LIFEGRID grant - La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)