Generic Filter

Metadata

• @name: Generic Filter
• @version: 2020.01
• @authors: Marion Landi and Melanie Petera for first version - Maintainer: Melanie Petera (PFEM ; INRAE ; MetaboHUB)
• @init date: 2014, december
• @main usage: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables.

Context

This tool is provided as one of the Workflow4Metabolomics Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.

User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

Configuration

Requirement:

• R software: version > 3.0.0 recommended
• Specific R library: 'batch'

Docker:

• Use of this tool in a docker context: Information is provided in the about_docker.md file.

Technical description

Main files:

• filter_script.R: R function (core script)
• filter_wrap.R: R script to link the main R function to inputs
• generic_filter.xml: XML wrapper (interface for Galaxy)

Services provided

• Help and support: support@workflow4metabolomics.org

License

• Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)