wrf genomeGTFtools issues

wrf / genomeGTFtools

convert various features into a GFF-like file for use in genome browsers

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allow InterProScan output

#21 wrf closed 1 year ago
0
The different domain genome coordinates for test viral genomes like ##sequence-region KJ755186.1 1 10774 ##sequence-region NC_007803.1 1 19212 ##sequence-region NC_012532.1 1 10794 ##sequence-region NC_045512.2 1 29903

#20 NailouZhang closed 1 year ago
10
fix description parsing

#19 wrf closed 2 years ago
0
--add-description seems not be implemented in blast2genomegff.py

#18 mictadlo closed 2 years ago
2
Hfq +

#17 cmvanduyn closed 1 year ago
0
Add the mRNA, cds features into the Stringtie outfiles?

#16 Huangyizhong closed 1 year ago
2
Errors in blast2genomegff.py

#15 TakashiKoyama closed 3 years ago
17
pfampipeline.py: FileNotFoundError: [Errno 2]

#14 mezoderma closed 2 years ago
2
clarified errors

#13 wrf closed 4 years ago
0
pfampipeline.py CANNOT FIND FILE

#12 mezoderma closed 4 years ago
4
microsynteny.py: GFF input for bacterial genomes

#11 sarah872 closed 4 years ago
2
microsynteny Name attribute change

#10 mictadlo closed 3 years ago
1
converting InterProScan results to genomic coordinates

#9 mictadlo opened 4 years ago
0
merging -K and no -K parameter

#8 mictadlo closed 3 years ago
3
UnboundLocalError: local variable 'geneid' referenced before assignment

#7 mictadlo closed 4 years ago
5
python 3 compatability

#6 photocyte closed 4 years ago
1
bast2gff.py concatenate hits

#5 mictadlo closed 3 years ago
11
TypeError: unsupported operand

#4 mictadlo closed 3 years ago
1
Make pfam2gff3 printing python2/3 compatible

#3 photocyte closed 5 years ago
8
pfam2gff genomics coordinates generate short pfam description

#2 agroppi closed 5 years ago
11
blast2genomegff.py missing in repository

#1 Eduardo-Alves closed 7 years ago
4