This repository accompanies the paper Matlock W, Lipworth S, Constantinides B, Peto TEA, Walker AS, Crook D, Hopkins S, Shaw LP, Stoesser N. Flanker: a tool for comparative genomics of gene flanking regions. Microbial Genomics. 2021. doi: https://doi.org/10.1099/mgen.0.000634

Installation and documentation

Read the Docs

Reproducibility

You can reproduce the analysis performed in our manuscript and the figures in the Binder environment below (click on the Binder badge, N.B. it is a bit slow to load - once the environment is loaded open the flanker.rmd file).

Tests

License

Flanker is available under the MIT License.