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wtsi-npg
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genotyping
Components of the WTSI genotype analysis pipeline.
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Infinium barcode hotfix
#367
iainrb
closed
9 years ago
0
Infinium barcode hotfix
#366
iainrb
closed
9 years ago
0
Merge changes for release 1.11.0
#365
iainrb
closed
9 years ago
0
Added ready_qc_calls.pl with supporting changes
#364
iainrb
closed
9 years ago
0
Fixed typo in variable name.
#363
keithj
closed
9 years ago
0
Added changelog file and updated README
#362
iainrb
closed
9 years ago
0
Remove error message in fluidigm_publisher.t
#361
iainrb
closed
7 years ago
1
Release 1.10.0
#360
iainrb
closed
9 years ago
0
Merge minor fixes from release branch
#359
iainrb
closed
9 years ago
0
Reorganised VCF input into Parser and Slurper classes, with tests
#358
iainrb
closed
9 years ago
0
VCFParser and related features
#357
iainrb
closed
9 years ago
0
Restore the correct return value of the idat function.
#356
keithj
closed
9 years ago
0
Merge changes to VCF for perlcritic
#355
iainrb
closed
9 years ago
0
Perl critic
#354
keithj
closed
9 years ago
0
Updates for perlcritic and from wtsi-npg/devel
#353
iainrb
closed
9 years ago
0
Fixed two bugs introduced during Perl Critic changes.
#352
keithj
closed
9 years ago
0
Enabled more Perl critic tests
#351
keithj
closed
9 years ago
0
Merge changes from iainrb/vcf_read_write and fix conflicts
#350
iainrb
closed
9 years ago
0
Update to allow 12 digit Infinium barcodes
#349
iainrb
closed
9 years ago
0
Enabled Perl critic (with temporary reprieve for many checks)
#348
keithj
closed
9 years ago
0
Refactor VCF code to use NPG Genotyping classes and types
#347
iainrb
closed
9 years ago
0
Addition to snpsets.ini, and corrected use statement for write_identity_csv.pl
#346
iainrb
closed
9 years ago
0
Improved metadata update robustness
#345
keithj
closed
9 years ago
0
Updated dependencies
#344
keithj
closed
9 years ago
0
Tests for Fluidigm metadata handling
#343
keithj
closed
9 years ago
0
Added one further module and more tests to Fluidigm subset
#342
keithj
closed
9 years ago
0
Portability and safety changes for Fluidigm support code
#341
keithj
closed
9 years ago
1
Added beadchip_design to the constructor calls for ResultSets
#340
keithj
closed
9 years ago
0
Add support for the ML warehouse for Fluidigm and beadchip design metadata for Infinium
#339
keithj
closed
9 years ago
0
Release 1.8.1
#338
iainrb
closed
9 years ago
0
Bugfix; ensure consistent SNP order in sample swap
#337
iainrb
closed
9 years ago
0
Modify swap metric implementation for greater efficiency
#336
iainrb
closed
9 years ago
0
Modify swap metric implementation for greater efficiency
#335
iainrb
closed
9 years ago
0
Add WIP QC to run_qc.pl and tests; bugfix for empty identity snpset
#334
iainrb
closed
9 years ago
0
Remove GenoSNP code
#333
iainrb
closed
9 years ago
0
Merge of keithj/devel
#332
iainrb
closed
9 years ago
0
Prototype of refactored QC identity check; updates to iRODS metadata
#331
iainrb
closed
9 years ago
2
Ignore the new history AVUs in the tests; these are tested elsewhere
#330
keithj
closed
9 years ago
0
IdentityPostProcess for CSV
#329
iainrb
closed
9 years ago
0
Gender pass/fail for missing 'supplied' gender
#328
iainrb
opened
9 years ago
0
Fluidigm iRODS performance improvements
#327
keithj
closed
9 years ago
0
Identity check attribute refactor
#326
keithj
closed
9 years ago
1
Comment out command-line test; update test data
#325
iainrb
closed
9 years ago
0
Roll back to last released version of script
#324
iainrb
closed
9 years ago
0
Updated identity QC
#323
iainrb
closed
9 years ago
0
New Identity.pm and SampleIdentity.pm classes with tests
#322
iainrb
closed
9 years ago
0
New SampleIdentity class; high-level methods to run identity checks
#321
iainrb
closed
9 years ago
1
Added swap evaluation to QC_wip::Check::Identity
#320
iainrb
closed
9 years ago
0
Added methods to match calls between the QC and sample results.
#319
keithj
closed
9 years ago
0
Method refactor
#318
keithj
closed
9 years ago
0
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