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wtsi-npg
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genotyping
Components of the WTSI genotype analysis pipeline.
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Query bug in publish_infinium_genotypes.pl
#417
keithj
closed
8 years ago
0
Remove default queue value of 'normal' in ready_workflow.pl
#416
iainrb
closed
8 years ago
0
Updated changelog for release 1.13.0
#415
iainrb
closed
8 years ago
0
Improvements to install.sh script
#414
iainrb
closed
8 years ago
2
Bugfix for install.sh
#413
iainrb
closed
8 years ago
1
New install.sh script; Sequenom test bugfix; perlcritic updates
#412
iainrb
closed
8 years ago
0
Updated documentation and Perl manifest
#411
iainrb
closed
8 years ago
0
Delete obsolete script bin/publish_infinium_file_list.pl
#410
iainrb
closed
8 years ago
0
Change Sequenom reference name from GRCh37_53 to 1000Genomes
#409
iainrb
closed
8 years ago
0
Fix for handling repeat scans.
#408
keithj
closed
8 years ago
0
Improve user interface in workflow setup
#407
iainrb
closed
8 years ago
0
Set binary flag when using Text::CSV
#406
keithj
closed
7 years ago
1
Bugfix: Add JSON file for expected identity output; update manifest
#405
iainrb
closed
8 years ago
0
New Bayesian identity threshold; updated documentation
#404
iainrb
closed
8 years ago
0
ready_workflow.pl improvements & updated dependencies
#403
iainrb
closed
8 years ago
2
Update perl tests for latest dependency versions
#402
iainrb
closed
8 years ago
1
Automated workflow setup
#401
iainrb
closed
8 years ago
1
Additional pipeline automation, including for Bayesian ID check
#400
iainrb
closed
8 years ago
1
Additional pipeline automation, including for Bayesian ID check
#399
iainrb
closed
8 years ago
1
Improved pipeline automation
#398
iainrb
closed
8 years ago
1
Fix suffixes - should not contain a dot
#397
keithj
closed
8 years ago
0
Add npg_tracking to requirements
#396
iainrb
closed
8 years ago
0
Undeclared dependency on npg_tracking
#395
keithj
closed
8 years ago
1
Hotfix for WTSI::NPG::Expression::Publisher when dealing with re-analysed samples.
#394
keithj
closed
8 years ago
0
Fix for RT #514522.
#393
keithj
closed
8 years ago
0
Add a customised test base class; fix bugs exposed in tests by new class
#392
iainrb
closed
8 years ago
0
Simulate effect of varying parameters for Bayesian ID check
#391
iainrb
closed
8 years ago
0
Set NPG_REPOSITORY_ROOT in pipeline
#390
iainrb
opened
8 years ago
0
Updated changelog for release 1.11.5
#389
iainrb
closed
8 years ago
0
Urgent bugfix: Reinstate line accidentally deleted from VCFDataSet.pm
#388
iainrb
closed
8 years ago
0
Permit new 12-digit barcodes for gene expression data.
#387
keithj
closed
8 years ago
0
CSV output for WIP identity results
#386
iainrb
closed
8 years ago
0
Fixed bugs in supplied gender reporting and duplicate processing
#385
iainrb
closed
8 years ago
0
Bugfix to correctly 'use' GenderMarkerCall in VCFDataSet; added tests
#384
iainrb
closed
8 years ago
0
Fix gendermarker issue; report all production genotypes
#383
iainrb
closed
8 years ago
0
Working version of Bayesian identity check
#382
iainrb
closed
8 years ago
0
Fix for handling failed experimental data
#381
keithj
closed
9 years ago
0
Enforce consistency of plex_manifest
#380
iainrb
closed
7 years ago
1
Hotfix 1.11.3
#379
iainrb
closed
9 years ago
0
Changes for hotfix 1.11.3
#378
iainrb
closed
9 years ago
0
Changes for hotfix 1.11.3
#377
iainrb
closed
9 years ago
0
Changes for hotfix release 1.11.3
#376
iainrb
closed
9 years ago
0
Replace deprecated CGI::Pretty module with plain CGI
#375
iainrb
closed
9 years ago
0
Find genome reference path using npg_tracking
#374
iainrb
closed
9 years ago
1
VCF metadata changes
#373
iainrb
closed
9 years ago
0
Add VCF identity check to Ruby workflows & tests
#372
iainrb
closed
9 years ago
0
Changes for hotfix release 1.11.1
#371
iainrb
closed
9 years ago
0
Updated changelog
#370
iainrb
closed
9 years ago
0
Infinium barcode hotfix revised
#369
iainrb
closed
9 years ago
0
Hotfix 1.11.1
#368
iainrb
closed
9 years ago
0
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