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wtsi-npg / npg_conda

NPG Conda recipes and tools
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iRODS 4.2.7 fails to build in Docker container, multiple errors #186

Closed kjsanger closed 3 years ago

kjsanger commented 4 years ago 
ERROR:root:    raise ResolvePackageNotFound(bad_deps)
ERROR:root:conda.exceptions.ResolvePackageNotFound:
ERROR:root:  - gzip
kjsanger commented 4 years ago

Removing the dependency gzip dependency (which doesn't appear to exist in defaults or conda-forge), reveals a new error:

ERROR:root:+ mkdir build_irods
ERROR:root:+ mkdir build_icommands
ERROR:root:+ cd build_irods
ERROR:root:+ git submodule init
ERROR:root:fatal: Not a git repository (or any parent up to mount parent /opt/conda)
ERROR:root:Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
dkj commented 4 years ago

I recall gzip is required, maybe in tests. I built with --build-channel ostrokach conda-forge to get gzip.