Found an error in your script: RNASeq_pipeline.sh

wuaipinglab / ImmuCC

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

http://218.4.234.74:3200/immune/

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Closed mitchellcheung8 closed 4 years ago

mitchellcheung8 commented 4 years ago

In your script : RNASeq_pipeline.sh,

There is an error at line 38 for the following : ref_path=4 # e.g., "/gluster/home/chenziyi/ref"

There should be a $ symbol: ref_path=$4 # e.g., "/gluster/home/chenziyi/ref"