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wuaipinglab / ImmuCC

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
http://218.4.234.74:3200/immune/
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Error with frma package in preprocessing #9

Closed carsonbroeker closed 3 months ago

carsonbroeker commented 4 years ago

Hello, I am encountering an error when getting to the frma package in the script

library(affy) library(frma) library(mouse4302mmentrezgcdf) library(mouse4302frmavecs) library(preprocessCore)

cel.path <- "C:/Users/cbroe/OneDrive/Documents/ImmuneCC_Microarray_Data/PYMT_BRCA_CEL"

result.path <- "C:/Users/cbroe/OneDrive/Documents/ImmuneCC_Microarray_Data/Result_PYMT_BRCA_CEL"

affydata <- ReadAffy(celfile.path=cel.path, cdfname="mouse4302mmentrezcdf") eset <- frma(affydata) Error in frma(affydata) : mouse4302mmentrezfrmavecs package must be installed first In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mouse4302mmentrezfrmavecs’

I have installed all of the necessary packages and tried the script with frma v1.36.0 and v1.30.1. Any help is appreciated.