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hra-pop
HRApop
MIT License
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Make plots for basic demographics in hra-pop
#42
andreasbueckle
opened
5 months ago
0
In Fig. ASHeteroHomo, implement feedback in email, see description
#41
andreasbueckle
opened
5 months ago
0
Added corridors from https://github.com/cns-iu/3d-corridor/tree/main/…
#40
andreasbueckle
closed
5 months ago
4
Added modality to consortium-breakdown. Fixes #38
#39
andreasbueckle
closed
5 months ago
0
Add modality to consortium-breakdown
#38
andreasbueckle
closed
5 months ago
0
Break out as-cell-summaries by as_3d_id
#37
andreasbueckle
closed
2 months ago
0
Added query to get sc vs spatial hra-pop dataset count (atlas)
#36
andreasbueckle
closed
5 months ago
0
Update sparql code for counts and info
#35
yokongkk
closed
5 months ago
0
Corridor URLs in atlas-enriched-dataset-graph return ```404```
#34
andreasbueckle
closed
2 months ago
4
Write query to get Table 1
#33
andreasbueckle
closed
2 months ago
3
Choose different vis
#32
andreasbueckle
closed
5 months ago
0
Add cosine sims between same AS during data analysis
#31
andreasbueckle
closed
5 months ago
0
Remove cut-off for fig-as-as-sim
#30
andreasbueckle
closed
5 months ago
0
Add # cells per dataset to heart and lung report (heart-and-lung-datasets.rq)
#29
bherr2
closed
5 months ago
0
Remove duplicates in ```figure-as-as-sim.csv```
#28
andreasbueckle
closed
5 months ago
2
Need to add the EBI single cell expression atlas data
#27
andreasbueckle
opened
6 months ago
0
Include non-atlas data in Fig. 3a (Sankey)
#26
andreasbueckle
closed
5 months ago
1
Resolve organ mismatch
#25
andreasbueckle
closed
2 months ago
0
In Figure 3b and others, rename portal
#24
andreasbueckle
closed
2 months ago
0
In Figure 4a and others, simplify organ names
#23
andreasbueckle
closed
2 months ago
0
Add number of non-atlas datasets to figure-f4.csv
#22
andreasbueckle
closed
6 months ago
0
Review README for hra-workflows and hra-workflow-runner
#21
andreasbueckle
closed
2 months ago
0
Add new report for most similar datasets
#20
andreasbueckle
closed
6 months ago
0
Added query and results for issue #14
#19
bherr2
closed
6 months ago
2
Refine Fig. 6: Data specification diagram.
#18
andreasbueckle
opened
6 months ago
4
In Fig. 3b, add sufficient number of colors
#17
andreasbueckle
closed
6 months ago
1
Update report for ```figure-f4``` to include more information about AS
#16
andreasbueckle
closed
6 months ago
0
```figure-f4``` returns questionable AS counts for Azimuth-annotated datasets
#15
andreasbueckle
closed
6 months ago
1
Need data for new figure to visualize homogeneity and heterogeneity
#14
andreasbueckle
closed
5 months ago
8
Add a note to Fig. 3b that skin sections share a RUI location that is only counted once.
#13
andreasbueckle
closed
6 months ago
0
Check why one of the GTEx datasets in Fig. 3b has such a lot cell count
#12
andreasbueckle
closed
6 months ago
1
Add scale bar to Fig. 3b
#11
andreasbueckle
closed
2 months ago
0
Figure out nested AS
#10
andreasbueckle
opened
6 months ago
1
Need new 3D positions for cells
#9
andreasbueckle
closed
2 months ago
9
Need new corridors
#8
andreasbueckle
closed
5 months ago
10
Spatial skin datasets missing in report
#7
andreasbueckle
closed
6 months ago
0
Add ```annotation_tool``` for ```as-cell-summaries```
#6
andreasbueckle
closed
6 months ago
1
Add tool dropdown to US2
#5
andreasbueckle
closed
6 months ago
1
Identify and mark duplicates across ```Portal```s
#4
andreasbueckle
opened
6 months ago
3
Add ```as_label``` to ```atlas-as-cell-summaries```
#3
andreasbueckle
closed
6 months ago
0
Rename ```bulk``` -> ```sc_bulk```
#2
andreasbueckle
closed
6 months ago
0
Pbi integrate updated queries from ctpop repo
#1
andreasbueckle
closed
7 months ago
0
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