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xavierdidelot
/
TransPhylo
Reconstruction of transmission trees using genomic data
http://xavierdidelot.github.io/TransPhylo/
GNU General Public License v2.0
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Printing Edges of the Transmission Tree
#36
MarriaK
closed
4 weeks ago
1
Question about pi's function
#35
PaulaSinis
closed
1 month ago
2
Multi-tree capability
#34
MarliesJFrancine
closed
4 months ago
2
Save result as phylo object
#33
MarliesJFrancine
closed
4 months ago
1
Errors when using infer_multittree_share_param
#32
lingxuan85511
closed
9 months ago
4
Temporal singnal detection
#31
liuxiong714
closed
1 year ago
1
Approach to select appropriate priors for generation and sampling time distributions
#30
dpenas-u
closed
1 year ago
6
error?
#29
liamxg
closed
1 year ago
6
Manipulating/edit plots
#28
am-epi
closed
1 year ago
2
Adding priors and/or postprocessing
#27
sapoudel
closed
1 year ago
1
Generation time first to Sampling time?
#26
dpenas-u
closed
1 year ago
1
summary.resTransPhylo
#25
am-epi
closed
1 year ago
2
Question about inferTTree parameters
#24
am-epi
closed
1 year ago
11
Merge pull request #22 from xavierdidelot/dev
#23
xavierdidelot
closed
2 years ago
0
Dev
#22
xavierdidelot
closed
2 years ago
0
Dev
#21
xavierdidelot
closed
2 years ago
1
Samples dated earlier than actual sampling date in t-tree
#20
lborcard
closed
2 years ago
3
Last date format
#19
lborcard
closed
2 years ago
7
Dev
#18
xavierdidelot
closed
2 years ago
0
Dev
#17
xavierdidelot
closed
2 years ago
0
Run time differences depending on tree time scale
#16
igoldsteinh
closed
2 years ago
7
Consensus and medoid trees on mult_ttree
#15
GaloGS
closed
3 years ago
2
Trouble importing ML tree into TransPhylo
#14
salemilab
closed
4 years ago
1
Please create conda package
#13
pvanheus
closed
4 years ago
8
bactdating followed by transphylo
#12
fengyuchengdu
closed
4 years ago
1
Too many iterations error
#11
ksw9
closed
5 years ago
2
Add vignette
#10
yuanwxu
closed
5 years ago
1
Add new file for multiple tree inference.
#9
yuanwxu
closed
5 years ago
0
Choosing a plausible Gamma prior
#8
phiweger
closed
5 years ago
1
Error "negative branch lengths" w/o negative branch lengths
#7
phiweger
closed
5 years ago
2
Precision fixes
#6
gtonkinhill
closed
6 years ago
1
installation problem
#5
thkuo
closed
6 years ago
2
underflow on large trees
#4
gtonkinhill
closed
6 years ago
1
Accessor functions
#3
yuanwxu
closed
7 years ago
0
Pull request for TransPhylo
#2
yuanwxu
closed
7 years ago
0
Error message when running inferTTree
#1
wilssh
closed
7 years ago
1