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xiaolei-lab
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rMVP
:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
Apache License 2.0
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FarmCPU output: NA in the fields of allelic effect, SE, and p-value
#101
AndModica
opened
3 weeks ago
0
Error: unknown variants [NA] at 301783th row of second column in HAPMAP file and others
#100
dleks-eha
closed
3 weeks ago
0
Warning message not reflected by the output
#99
AndModica
opened
2 months ago
2
Problems on Import genotype file to R from TASSEL
#98
wangchunli2024
opened
2 months ago
8
No PC or Kinship generated
#97
ramendra-sarma
opened
5 months ago
0
Question about PCA analysis
#96
1795106897
opened
6 months ago
0
Manhattan plot
#95
elissaralam
opened
7 months ago
0
NA is not allowed in genotype, use 'MVP.Data.impute' to impute
#94
suvihon
opened
9 months ago
1
Fitting PCs with nPC vs CV
#93
JandehF
opened
10 months ago
3
A question about VCF format conversion
#92
yuxizhang01
opened
10 months ago
3
How can I calculate kinship matrix using the geno matrix?
#91
bechee
opened
10 months ago
0
Error in formatC(threshold/m, format = "e", digits = 2) : object 'n' not found
#90
Wyinghao
closed
11 months ago
0
Error in make.names(col.names, unique = TRUE) : invalid multibyte string at '<ff><fe>I'
#89
Wyinghao
closed
11 months ago
2
A question about FarmCPU
#88
z4668640
closed
1 year ago
3
Can rMVP work on continuous genotype data?
#87
White-Shinobi
opened
1 year ago
1
PCA code given in the main pages only giving the 2D PCA, but image of 3D PCA plot is also given but its code is not provide, kindly please provide the code for 3D plot
#86
krishna10597
opened
1 year ago
0
Total 1 individuals removed due to missings Error in GetElements.bm(x, i, j) : Illegal column index usage in extraction. Calls: MVP -> [ -> [ -> .local -> GetElements.bm
#85
kmosi0
opened
1 year ago
0
ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.
#84
rupesht
opened
1 year ago
1
ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.
#83
rupesht
opened
1 year ago
6
Calculating PVE in rMVP
#82
jhavill
opened
1 year ago
1
Error in analysing the all phenotype
#81
ramendra-sarma
opened
1 year ago
0
Performing FarmCPU with iteraction between SNP
#80
DominiqueAhouanhode
opened
2 years ago
2
表型分布
#79
MooreZhu
closed
2 years ago
1
using multiple cores
#78
MuBulut
closed
1 year ago
3
Problem in imMVP execution "Number of individuals in phenotype and genotype doesn't match"
#77
DominiqueAhouanhode
opened
2 years ago
5
How to inport Q-matrix (from structure) to achieve Q+K mix module
#76
yiomoiy
closed
2 years ago
2
Unable to run rMVP Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'nrow': object 'Phenotype' not found
#75
rupesht
opened
2 years ago
1
implement BLINK method in rMVP
#74
binlu1981
opened
2 years ago
0
set encoded sex as factor or numeric
#73
binlu1981
opened
2 years ago
1
identical result from GLM and FarmCPU
#72
binlu1981
opened
2 years ago
5
error in MVP.Data.Numeric2MVP processing separator
#71
liusy-jz
opened
2 years ago
0
Can combine multiple covariates and load as single covariates file
#70
shameem356
opened
2 years ago
4
Can I directly use the imputation data (in vcf format) from Michigan Impuation server or TOPMed Imputation server without the need to modify data?
#69
ashaked
opened
3 years ago
0
Can't install rmVP
#68
TinaNeik339
closed
1 year ago
3
issure about PC
#67
Feng560
opened
3 years ago
4
Genome-wide threshold input
#66
zokozen
closed
3 years ago
0
Lots of snp sites with extreamly high P value
#65
Dkyuan
opened
3 years ago
4
MVP pvalue permutation returned
#64
jrod55
closed
3 years ago
2
Error loading hapmap and vcf files
#63
PaulineSnor
opened
3 years ago
4
If i have genotype data in Numeric format, do I need to adjust the order of genotype file to be consistent with phenotype and map file?
#62
biolittleboy
opened
3 years ago
1
Error: Could not find tools necessary to compile a package
#61
TinaNeik339
closed
3 years ago
1
Error in MVP.Data
#60
TinaNeik339
closed
3 years ago
2
How to export PCA matrix?
#59
Arthur1021
closed
3 years ago
1
How to use of FDR adjusted Pvalues for threshold at 0.05 and 0.01 level of significance
#58
sakhale2
opened
3 years ago
3
Different output from GAPIT Farmcpu and rMVP Farmcpu
#57
shameem356
opened
3 years ago
3
Is it possible to apply the program to haploid dataset?
#56
WangYue0926
opened
3 years ago
2
What's the change of 1.0.3 to 1.0.4?
#55
Jiny000
closed
1 year ago
2
Changing marker size for bonferoni correction
#54
mtross2
closed
1 year ago
2
Feature request: Add N, Allele1 and Allele2 info to MVP output
#53
songtaogui
opened
3 years ago
1
permutation quantile
#52
micwij
closed
3 years ago
6
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