mdseqpos python package
Authors: Len Taing, Ying Lei, Cliff Myers, Tao Liu, Ma Jian, et al
Contact: lentaing@jimmy.harvard.edu
URL:'http://cistrome.dfci.harvard.edu/ap'
INSTALLATION INSTRUCTIONS:
- install package dependencies:
a. jinja2
b. ghostscript
c. numpy v. 1.3.0 or greater
- copy lib/settings.py.example to lib/settings.py
- specify where your UCSC assemblies are by modifying ASSEMBLY_DIR and
BUILD_DICT in lib/settings.py
- run version_updater: e.g. $ ./version_updater.py
- as sudo, type: python setup.py install
// below is my note for internal users.
// if you want install it on brca for your own.
step 1-4 is the same.
- change NUMPY_PATH in setup.py to:
os.path.join(sys.prefix,"lib","python"+sys.version[:3], 'numpy')
- python setup.py install --prefix=
- modify PYTHONPATH if necessary