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xingjianleng
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DBGA
The repository for the genome sequence alignment research project
BSD 3-Clause "New" or "Revised" License
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change TreeAlign to tree_align, and add data_dir test fixture
#28
khiron
closed
5 months ago
0
competing algorithm
#27
GavinHuttley
opened
1 year ago
0
CRASSPhage data set
#26
GavinHuttley
opened
1 year ago
2
provide an interface for parameter controls
#25
GavinHuttley
opened
1 year ago
0
find multiple sequence alignment benchmarking data sets
#24
GavinHuttley
opened
1 year ago
0
implement a progressive alignment integration algorithm
#23
GavinHuttley
opened
1 year ago
1
evaluating alignment quality
#22
GavinHuttley
opened
1 year ago
2
where is the guide tree estimated?
#21
GavinHuttley
opened
1 year ago
1
extending dbga to use a different substitution model
#20
GavinHuttley
opened
1 year ago
5
identify lines where modifications for bubble mismatch can be identified
#19
GavinHuttley
opened
1 year ago
1
refactor kmer code to use cogent3 routines
#18
GavinHuttley
opened
1 year ago
0
refactor major classes to reduce complexity
#17
GavinHuttley
opened
1 year ago
0
move datasampler module
#16
GavinHuttley
opened
1 year ago
0
How to filter invalid merge_node_indices for multi-sequence de Bruijn alignment?
#15
xingjianleng
opened
2 years ago
0
How to estimate the branch length in the tree for MSA>
#14
xingjianleng
closed
2 years ago
1
The way to make a tree for MSA?
#13
xingjianleng
closed
1 year ago
1
Requiring more divergent sequences
#12
xingjianleng
closed
1 year ago
1
Requesting challenging dataset for testing de Bruijn alignment algorithm
#11
xingjianleng
closed
1 year ago
2
Add previous merge node to alignment
#10
xingjianleng
closed
2 years ago
0
MERS virus sequences dataset.
#9
xingjianleng
closed
2 years ago
2
Project description and milestones
#8
xingjianleng
closed
2 years ago
3
Implement a prototype algorithm to map a de Bruijn graph to a partial order graph
#7
xingjianleng
closed
1 year ago
0
Analyse the corona virus sequence dataset to determine the appropriate k size for de Bruijn graph
#6
xingjianleng
closed
1 year ago
0
Find out the mapping from the de Bruijn graph to the Partial Order graph
#5
xingjianleng
closed
1 year ago
0
Problem when running benchmark on poapy ans MUSCLE
#4
xingjianleng
closed
2 years ago
3
Finding out the way to measure how good a alignment algorithm is
#3
xingjianleng
closed
1 year ago
1
Testing of COVID genome sequence alignment on different algorithms and software
#2
xingjianleng
closed
2 years ago
3
Weekly to-do list (28th, Feb, 2022)
#1
xingjianleng
closed
2 years ago
1