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xomicsdatascience
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zoDIAq
Cosine Similarity Optimization for DIA qualitative and quantitative analysis
MIT License
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updated pyproject.toml version
#82
CCranney
closed
4 months ago
0
peptide quant file should contain protein mapping
#79
jessegmeyerlab
opened
6 months ago
1
various minor bug fixes pushed to main
#78
CCranney
closed
7 months ago
0
various minor bug fixes
#77
CCranney
closed
7 months ago
0
Dev
#76
CCranney
closed
10 months ago
0
added quantification method choice to GUI (previously only by command…
#75
CCranney
closed
10 months ago
0
adjust prosit column names to exclude modifications (prosit limits)
#74
CCranney
closed
11 months ago
0
Dev
#73
CCranney
closed
11 months ago
0
Dev library formatting - decoy generation script for library inputs developed
#72
CCranney
closed
11 months ago
0
Dev library formatting - decoy generation implementation
#71
CCranney
closed
11 months ago
0
Library Format Extension - Spectrast, Fragpipe, Prosit
#70
CCranney
closed
11 months ago
1
updating 'format_protein_list_to_string' util function returns protei…
#69
CCranney
closed
1 year ago
0
zoDIAq 2.0 pull request
#68
CCranney
closed
1 year ago
0
Dev feature updates
#67
CCranney
closed
1 year ago
1
Dev - maxlfq and sum protein quantification strategies and optimization
#66
CCranney
closed
1 year ago
0
protein quantification set up and tested
#65
CCranney
closed
1 year ago
0
Peptide and Protein Quantification Experimentation
#64
CCranney
closed
1 year ago
12
Dev system tests implemented
#63
CCranney
closed
1 year ago
0
Dev identification modularization, speed optimization
#62
CCranney
closed
1 year ago
0
Dev identifier targeted reanalysis
#61
CCranney
closed
1 year ago
0
Dev identifier system test implementation
#60
CCranney
closed
1 year ago
0
Dev identifier system test implementation
#59
CCranney
closed
1 year ago
1
Dev identifier secondary workflows - protein output
#58
CCranney
closed
1 year ago
0
dev - identifier implemented and rebased
#57
CCranney
closed
1 year ago
0
Dev loader updates
#56
CCranney
closed
1 year ago
0
Dev query loaders
#55
CCranney
closed
1 year ago
1
Dev loader rewrite - Library Loader Classes
#54
CCranney
closed
1 year ago
2
added test files
#53
AlexandreHutton
closed
1 year ago
0
Update library_format_columns.py
#52
AlexandreHutton
closed
1 year ago
0
extended peptide quantification to all peptides
#51
AlexandreHutton
closed
2 years ago
0
added plotting functions for spectra and spectra comparison
#50
AlexandreHutton
closed
2 years ago
0
added precursor mz to common peptide file
#49
AlexandreHutton
closed
2 years ago
0
fixed library loading inconsistency with previous versions
#48
AlexandreHutton
closed
2 years ago
0
improved column naming for common_x from quantification; fixed naming bug
#47
AlexandreHutton
closed
2 years ago
0
peptide quantification now examines peptideFDR instead of proteinFDR
#46
AlexandreHutton
closed
2 years ago
0
Fix: warnings & timestamps
#45
AlexandreHutton
closed
2 years ago
0
idpicker/find_valid_proteins returns different ordering across repetition
#44
AlexandreHutton
closed
1 year ago
1
gui modifications
#43
AlexandreHutton
closed
2 years ago
0
FDR calculation does not work when I lower the mass range
#42
LiaSerrano
opened
2 years ago
7
peptide IDs affected by the quantification patch
#41
jessegmeyerlab
closed
2 years ago
0
Peptide quantitation module: missing peptides
#40
jessegmeyerlab
closed
2 years ago
0
GUI options
#39
jessegmeyerlab
closed
2 years ago
1
print statements during run: timestamps and warnings
#38
jessegmeyerlab
closed
2 years ago
0
bugfix for multiple FDR file matches
#37
AlexandreHutton
closed
2 years ago
0
bugfixes
#36
AlexandreHutton
closed
2 years ago
0
common_peptide column names
#35
AlexandreHutton
closed
2 years ago
0
added versioning tidbit; added missed dependency
#34
AlexandreHutton
closed
2 years ago
0
Peptide + protein post-processing quantification
#33
AlexandreHutton
closed
2 years ago
0
Numerical error with output library m/z
#32
AlexandreHutton
opened
2 years ago
0
Library table lookup + protein names
#31
AlexandreHutton
opened
2 years ago
2
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