search

yana-safonova / ig_repertoire_constructor

An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis
Other
17 stars 8 forks source link

install test fail #100

Open homopolymer opened 7 years ago

homopolymer commented 7 years ago

Hi, I ran ./igrec.py --test to verify the installation, but failed and got the following messages.

==== Low Abundant Clusters Remover finished [Errno 39] Directory not empty: 'igrec_test/dense_sgraph_finder' Traceback (most recent call last): File "./igrec.py", line 956, in main RemoveAuxFiles(params) File "./igrec.py", line 906, in RemoveAuxFiles shutil.rmtree(params.io.dsf_output) File "/home/fzeng/anaconda/lib/python2.7/shutil.py", line 256, in rmtree onerror(os.rmdir, path, sys.exc_info()) File "/home/fzeng/anaconda/lib/python2.7/shutil.py", line 254, in rmtree os.rmdir(path) OSError: [Errno 39] Directory not empty: 'igrec_test/dense_sgraph_finder'

ERROR: Exception caught.

In case you have troubles running IgReC, you can write to igtools_support@googlegroups.com. Please provide us with ig_repertoire_constructor.log file from the output directory. [Errno 39] Directory not empty: 'igrec_test/dense_sgraph_finder'

yana-safonova commented 7 years ago

Hi!

Thank you for your interest in IgRepertoireConstructor!

This failure looks like troubles with permission. Can you make sure that you have permission to remove directories in your working directory?

Could you please also try the following command? ./igrec.py --test --debug Such command keeps all auxiliary files and directories in igrec_test. If the reason is in permission restriction, it should help to finish launch.