ydLiu-HIT deSALT issues

ydLiu-HIT / deSALT

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

MIT License

44 stars 7 forks source link

issues

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index issue

#48 xuan13hao opened 3 months ago
0
File error:wrong route or wrong file name

#47 kimiasalek opened 9 months ago
0
git clone source code error

#46 ryao-mdanderson opened 1 year ago
0
error with aln CLI

#45 andyjslee closed 2 years ago
0
Segmentation fault

#44 gouwei1 opened 2 years ago
0
Wrong strand information

#43 Shisheng-Huang opened 2 years ago
0
Segmentation fault error

#42 gmoneyomics opened 2 years ago
1
error compiling - multiple difinitions of variables

#41 jdmontenegro opened 4 years ago
0
Annotation_Load.py problems

#40 HegedusB closed 4 years ago
3
Alignment stuck on "0st loop of refined alignment procedure"

#39 a-sneddon closed 4 years ago
2
Error: index_build.c:4:10: fatal error: 'malloc.h' file not found

#38 TommySchooner closed 4 years ago
3
git@github.com: Permission denied (publickey).

#37 TommySchooner closed 4 years ago
0
Segmentation fault (core dumped) with SIRV gtf for genome.info (--gtf)

#36 janoppelt closed 4 years ago
3
Long argument for -p

#35 janoppelt closed 4 years ago
1
Error criteria for -p 1.0

#34 janoppelt closed 4 years ago
0
deSALt is crashing again and gain after second phase of mapping?

#33 unique379 closed 4 years ago
2
Bug: No space between sequence and qual

#32 f0t1h closed 4 years ago
3
typo: Ececuting --> Executing

#31 baraaorabi closed 4 years ago
1
mapped query cannot have zero coordinate

#30 BeatrizdeToledo closed 4 years ago
13
Strand information

#29 gmoneyomics closed 4 years ago
4
index interrupted

#28 BeatrizdeToledo closed 4 years ago
3
Question: linewidth

#27 hengjwj closed 4 years ago
1
exon length distribute?

#26 luckylyw closed 4 years ago
14
CIGAR string includes contiguous N regions

#25 GenomeRIK closed 4 years ago
6
deSALT core dump #3

#24 pckorhon closed 4 years ago
1
deSALT reference identifier missing in SAM file

#23 pckorhon closed 4 years ago
2
deSALT alignment code dump #2

#22 pckorhon closed 4 years ago
2
deSALT alignment core dumps

#21 pckorhon closed 4 years ago
2
deSALT does not identify exon-intron boundaries

#20 pckorhon closed 4 years ago
2
CIGAR string bug when clipping due to end of scaffold

#19 GenomeRIK closed 4 years ago
18
Hard limit on number of threads

#18 baraaorabi closed 4 years ago
1
mapped reads with zero coordinate

#17 HegedusB closed 4 years ago
5
Wrong CIGAR (insertion of length 0)

#16 lucventurini closed 4 years ago
6
no supplementary alignment in output

#15 defendant602 opened 4 years ago
1
all were the single exon for transcripts assembled by stringtie

#14 liufuyan2016 closed 4 years ago
5
fix_cigar: Assertion `qoff == qlen && toff == tlen' failed.

#13 liufuyan2016 closed 4 years ago
0
Indexing undoing, deBGA index exit abnormally

#12 defendant602 closed 4 years ago
10
Input error: -k cannot be less than 14 or more than 14

#11 ksahlin closed 4 years ago
2
ProcessReads: Command terminated by signal 11

#10 ksahlin closed 4 years ago
17
annotation script parsing error

#9 ksahlin closed 4 years ago
2
Questions about your simulated datasets

#8 lauraht closed 5 years ago
3
merge

#7 ydLiu-HIT closed 5 years ago
0
Suitable for alignment to short reference?

#6 gdonahue closed 5 years ago
1
mapping of partial reads

#5 michieitel closed 5 years ago
2
Update README.md

#4 tjiangHIT closed 5 years ago
0
Update README.md

#3 tjiangHIT closed 5 years ago
1
update

#2 ydLiu-HIT closed 5 years ago
0
update

#1 ydLiu-HIT closed 5 years ago
0