Open kastman opened 6 years ago
Occasionally with some alignments (currently in the non_ref_contigs.sh workflow) I'm getting very large negative numbers for the beginning of my intervals; e.g. https://github.com/yeastgenome/AGAPE/blob/master/non_ref_contigs.sh#L21
non_ref_contigs.sh
$BIN/find_inserted_intervals $out_dir/temp.maf $scf_name $len >> $out_dir/$seq_name.inserted.intervals
occasionally creates intervals like this (see unplaced-504 beginning at -536870911):
$ cat $seq_name.inserted.intervals | head unplaced-402 2 618 unplaced-423 485 1991 unplaced-504 -536870911 206 unplaced-529 1 1724 unplaced-563 1 1521
Any idea why this might be, and how to fix it?
Occasionally with some alignments (currently in the
non_ref_contigs.shworkflow) I'm getting very large negative numbers for the beginning of my intervals; e.g. https://github.com/yeastgenome/AGAPE/blob/master/non_ref_contigs.sh#L21occasionally creates intervals like this (see unplaced-504 beginning at -536870911):
Any idea why this might be, and how to fix it?