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yerkes-gencore
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gencoreBulk
An R package to facilitate bulk RNAseq analyses at the ENPRC Genomics Core
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Dev
#35
derrik-gratz
closed
2 months ago
1
fix scaling on gsea dotplots
#34
derrik-gratz
opened
3 months ago
2
fGSEA call should not be 'simple', just `fGSEA`
#33
derrik-gratz
closed
2 months ago
0
Dev
#32
derrik-gratz
closed
3 months ago
0
update heatmap from genelist examples for new arguments
#31
derrik-gratz
closed
3 months ago
0
gseaDotplot_joint radius scaling issue
#30
derrik-gratz
closed
3 months ago
2
Handle heatmaps passed a single gene to plot
#29
derrik-gratz
closed
4 months ago
1
Dev
#28
derrik-gratz
closed
4 months ago
2
Allow heatmap to not normalize if no baseline provided
#27
derrik-gratz
closed
4 months ago
2
Convert seurat2 pb
#26
micahpf
opened
5 months ago
2
Dev
#25
derrik-gratz
closed
5 months ago
0
`ggplotMDS`: allow user to not specify `path`
#24
micahpf
opened
5 months ago
0
Dev
#23
derrik-gratz
closed
6 months ago
0
separate contrast arrow generation
#22
derrik-gratz
closed
6 months ago
0
`bulk$contrasts` -> `bulk$fit.contrasts` see ca6bf39 of #19
#21
micahpf
closed
6 months ago
0
Generalize dotplot, remove RENV, add model-fit visualization
#20
derrik-gratz
closed
6 months ago
1
Porting `limmaEdgeR_functions.R` from `bulk_template` to `gencoreBulk`
#19
micahpf
closed
6 months ago
4
add biocmanager specs to description file
#18
derrik-gratz
closed
6 months ago
0
`extractFilteredDESeqResults` doesn't correctly stop if object design isn't in correct format
#17
derrik-gratz
closed
7 months ago
2
Update RLE.R
#16
derrik-gratz
closed
1 year ago
0
Library type
#15
derrik-gratz
closed
1 year ago
0
Derrik dev
#14
derrik-gratz
closed
1 year ago
0
option for normalized count table output
#13
derrik-gratz
closed
1 year ago
0
option to specify transcript ID's in count tables
#12
gktharp1
opened
1 year ago
1
PCA didn't use pcaMapping information
#11
gktharp1
closed
7 months ago
2
output files not tagged with project identifier
#10
gktharp1
closed
1 year ago
1
Sample ID from read file names
#9
gktharp1
closed
7 months ago
1
Options
#8
gktharp1
closed
1 year ago
1
Library dependencies
#7
gktharp1
closed
7 months ago
1
Derrik dev
#6
derrik-gratz
closed
1 year ago
0
clean code
#5
derrik-gratz
closed
1 year ago
0
Derrik dev
#4
derrik-gratz
closed
1 year ago
0
styled via styler::syle_pkg
#3
derrik-gratz
closed
1 year ago
0
Derrik dev
#2
derrik-gratz
closed
1 year ago
0
Derrik dev
#1
derrik-gratz
closed
1 year ago
0