Codes for the watermelon pangenome project in 2023

01. Genome survey

Codes for genome survey.

02. T2T Genome assembly and polishing

Codes for de novo genome assembly and polishing.

03. Identification of centromere and telomere sequence

Codes for identification of centromere and telomere sequence.

04. Genome evaluation

Codes for genome evaluation.

05. Genome annotation

Codes for genome annotation.

06. Organellar Genome Assembly and Annotation

Codes for genome organellar genome assembly and annotation.

07. Phylogenetic tree analyses

Codes for phylogenetic tree analyses.

08. Gene family identification and phylogenetic analysis

Codes for gene family identification.

09. Structural variation identification

Codes for structural variation identification.

10. A/B compartment identification

Codes for A/B compartment identification.

11. GWAS analyses

Codes for GWAS analyses.

12. Graph-based genome construction

Codes for Graph-based genome construction.

Citation

Contacts

yilinzhang@stu.pku.edu.cn (Yilin Zhang)

huangmh@pku.edu.cn (Minghan Huang)