issues
search
yniknafs
/
taco
Transcriptome Assemblies Combined into One
2
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Nocpat
#22
yniknafs
opened
7 years ago
0
Refcomp
#21
yniknafs
opened
7 years ago
0
Added -w flag to Cython compiled files in setup.py
#20
balajipandian
closed
8 years ago
1
linux sort memory usage excessive
#19
mkiyer
closed
8 years ago
2
Aggregate c extension
#18
balajipandian
closed
8 years ago
0
Install lacking import modules -- bugfix
#17
balajipandian
opened
8 years ago
0
split by genes after second frac determination
#16
yniknafs
closed
8 years ago
1
Change point algorithm fails on small nodes
#15
mkiyer
opened
8 years ago
0
Filter unstranded/monoexonic transfrags
#14
mkiyer
closed
8 years ago
1
Improve performance of path graph optimization / creation
#13
mkiyer
closed
8 years ago
1
Collapse splice graph
#12
mkiyer
opened
8 years ago
1
Cufflinks produces isoforms with zero expression
#11
mkiyer
closed
8 years ago
1
GTF file with change points
#10
mkiyer
closed
8 years ago
2
Path graph may be generating "dangling" ends
#9
mkiyer
closed
8 years ago
1
Upon creating change point adjust transcript starts and ends
#8
mkiyer
closed
8 years ago
1
Change point recursion should take into account "magnitude" of change
#7
mkiyer
closed
8 years ago
2
Parallelize assembly steps
#6
mkiyer
closed
8 years ago
2
make transfrag reader/aggregator ignore transfrags shorter than the min length
#5
mkiyer
closed
8 years ago
1
use some compressed/indexed form of the GTF (e.g., bam, tabix)
#4
yniknafs
closed
8 years ago
2
parallelize aggregate function (read + write)
#3
yniknafs
closed
8 years ago
2
Parse reference during aggregate function to identify reference starts and stops
#2
yniknafs
closed
8 years ago
1
Add poly-A to aggregate function
#1
yniknafs
closed
8 years ago
1