DeepGraphGO

DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

Requirements

• python==3.8.3
• numpy==1.19.2
• scipy==1.5.0
• scikit-learn==0.22.1
• networkx==2.4
• torch==1.6.0
• dgl==0.4.3post2
• click==7.1.2
• ruamel.yaml==0.16.6
• biopython==1.78
• tqdm==4.47.0
• logzero==1.5.0
• joblib==0.16.0

Experiments

./scripts/preprocessing.sh
./scripts/run_mf.sh
./scripts/run_bp.sh
./scripts/run_cc.sh