ythuang0522 homopolish issues

ythuang0522 / homopolish

High-quality Nanopore-only genome polisher

GNU General Public License v3.0

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issues

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version.py

#64 ndombrowski opened 2 months ago
0
FTP to https

#63 JonathanAbrahams1337 opened 4 months ago
0
Conda installation- complications

#62 JonathanAbrahams1337 opened 4 months ago
3
ImportError: cannot import name 'cached_property' from 'functools'

#61 AnyaKovalenko opened 7 months ago
15
key error 10

#60 hiagro opened 1 year ago
1
Bacterial sketches file not found?

#59 vebaev closed 8 months ago
1
Process killed at `Select closely-related genomes` stage on local machine

#58 ezherman closed 1 year ago
7
Mamba installation with strict channel priority fails for homopolish v0.4.1

#57 ezherman closed 1 year ago
8
Failure at homologous retrieval stage: "DataFrame is empty!"

#56 ezherman closed 1 year ago
6
Sequence download fails (Too Many Requests)

#55 yari-iw opened 1 year ago
2
homopolish then modpolish or just modpolish?

#54 aldertzomer closed 1 year ago
2
modpolish division by zero

#53 aldertzomer closed 1 year ago
1
mitochondrial, chloro, and other plastid genomes

#52 AntonioBaeza opened 1 year ago
2
speed up reads mapping

#51 chen1i6c04 closed 1 year ago
0
UnboundLocalError: local variable 'record' referenced before assignment

#50 chen1i6c04 closed 1 year ago
4
Could you provide option homopolymer polishing only?

#49 piroonj closed 1 year ago
4
Plasmid not existed in modpolish output

#48 chen1i6c04 closed 1 year ago
4
homopolish modpolish Index error

#47 giriarteS opened 2 years ago
6
Alternatives to Evaluating Assembly Quality without Reads

#46 afvrbanac closed 1 year ago
2
Let user set number of cpu and output path of middle file in modpolish

#45 chen1i6c04 closed 2 years ago
2
bacterial isolates: less than 5 closely-related genomes error message & problems with -g (genus)

#44 Dwrgi opened 2 years ago
3
R10.4.pkl ?

#43 Calvinblue opened 2 years ago
7
New Options

#42 chengjun109 closed 2 years ago
0
using virus.msh for HSV-1 assembly polishing and having less than 5 related-genomes for polish

#41 rezaeir opened 2 years ago
9
No output after successful run

#40 schorlton closed 2 years ago
7
The issues of downloading homologous_sequences

#39 LeeSongEpi2013 closed 2 years ago
14
Using homopolish after pilon directly

#38 JamesYang1209 closed 2 years ago
4
FileNotFoundError: [Errno 2] No such file or directory: 'ANI.txt'

#37 chen1i6c04 closed 2 years ago
6
Homopolish run

#36 aman21392 closed 3 years ago
1
Fix db_path bug

#35 chengjun109 closed 3 years ago
0
db_path not defined

#34 hxg2760 closed 3 years ago
1
Fix download plasmid

#33 chengjun109 closed 3 years ago
0
Fixed somes bugs(if '/' present in the FASTA header)

#32 chengjun109 closed 3 years ago
0
Creating debug folders impossible if '/' present in the FASTA header

#31 cchapus closed 3 years ago
2
import TextColor module in download.

#30 J-I-P closed 3 years ago
0
NameError: name 'TextColor' is not defined

#29 mmsrand closed 2 years ago
2
-d debug

#28 chengjun109 closed 3 years ago
0
chenge version

#27 chengjun109 closed 3 years ago
0
local DB and fixed some bugs

#26 chengjun109 closed 3 years ago
0
ValueError: Input contains NaN

#25 JamesYang1209 closed 2 years ago
13
nothing (seems to be) happening

#24 JWDebler closed 3 years ago
2
Custom genome database

#23 snayfach closed 2 years ago
11
Run failed when run multi programs at the same time

#22 chen1i6c04 closed 3 years ago
2
Hotfix/update meta

#21 J-I-P closed 3 years ago
0
Hotfix/update meta2

#20 J-I-P opened 3 years ago
0
Hotfix/update meta

#19 J-I-P opened 3 years ago
0
Output file empty

#18 DDavila10 closed 3 years ago
7
Error when using the flag --meta

#17 DDavila10 closed 3 years ago
4
Datasets from bioRxiv paper

#16 mw55309 closed 3 years ago
1
Upload data & Renew R10.3 model

#15 ian101610 closed 3 years ago
0