FIX:compatibility issue in gtf2bed.R for mouse annotation

yuntianf / Longcell-pre

Preprocessing for single cell/Visium Nanopore long reads sequencing to generate isoform quantification

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FIX:compatibility issue in gtf2bed.R for mouse annotation #2

Closed alihamraoui closed 4 months ago

alihamraoui commented 5 months ago

This commit addresses and resolves a bug where the gtf2bed.R was previously tailored for human gene_id and failed with mouse genome data due to differences in gene_id sizes. The script is now compatible with both human and mouse genome annotations.