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zaneveld
/
karenina
Simulation and modeling tools for studying Anna Karenina effects in animal microbiomes
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documentation fixes
#57
SLPeoples
closed
6 years ago
0
Add an interpolation option to visualizer.py
#56
zaneveld
opened
6 years ago
0
Read/write qza outputs natively by simplifying interface between simulate_ornstein_uhlenbeck and visualizer.py
#55
zaneveld
opened
6 years ago
1
Fix Simulation and Documentation
#54
SLPeoples
closed
6 years ago
0
Refactor benchmark
#53
zaneveld
closed
6 years ago
0
AIC receives incorrect value in benchmark.py
#52
zaneveld
closed
6 years ago
0
Refactor fit_timeseries_benchmark.py
#51
zaneveld
closed
6 years ago
0
Modeling sequencing error
#50
zaneveld
opened
6 years ago
0
Addition of Documentation, Error fixes
#49
SLPeoples
closed
6 years ago
1
update visualization to count save_* parameter values
#48
SLPeoples
opened
6 years ago
0
Standardize all variable names
#47
SLPeoples
opened
6 years ago
0
Modify Moving Pictures Treatment (In Metadata)
#46
SLPeoples
opened
6 years ago
0
Create visualization scatterplots for cohorts
#45
SLPeoples
opened
6 years ago
0
Fix Cohort size-checks
#44
SLPeoples
opened
6 years ago
0
Addition of Cohort Support
#43
SLPeoples
closed
6 years ago
0
Update PCOA simulation output
#42
SLPeoples
opened
6 years ago
0
Permutation test for significance of between treatment parameter differences
#41
zaneveld
opened
6 years ago
0
Fix unique identifier
#40
SLPeoples
closed
6 years ago
0
Generate mapping file on OU simulation
#39
SLPeoples
closed
6 years ago
0
Remove duplicate datapoints
#38
SLPeoples
closed
6 years ago
1
Issue Resolution, Simulation data generation
#37
SLPeoples
closed
6 years ago
0
Add QIIME QZA format PCoA and distance matrix output to simulate_OU_timeseries
#36
zaneveld
closed
6 years ago
0
Drop support for python 2.0
#35
zaneveld
closed
6 years ago
0
fix benchmarking graph output
#34
SLPeoples
closed
6 years ago
0
Verbose should have a default value of False and be the last parameter
#33
zaneveld
closed
6 years ago
0
Allow installation support for fit_timeseries, configure IO, merge benchmarking
#32
SLPeoples
closed
6 years ago
1
fit_timeseries.py Accept input Qiime2 files
#31
SLPeoples
closed
6 years ago
0
Qiime2 Plugin Support
#30
SLPeoples
opened
6 years ago
1
Add installation support for fit_timeseries
#29
SLPeoples
closed
6 years ago
1
Basinhopping in fit_timeseries testing
#28
SLPeoples
opened
6 years ago
0
Verbose keyword arguments
#27
SLPeoples
opened
6 years ago
0
test_experiment, addition of verbose support, addition of verbose testing platform
#26
SLPeoples
closed
6 years ago
0
Parse perturbation file fix and test function
#25
hoikincheng
closed
6 years ago
0
Parse perturbation files fix and test cases
#24
hoikincheng
closed
6 years ago
2
Travis CI Engine and Issue Resolution
#23
SLPeoples
closed
6 years ago
0
fit_timeseries still has a PyCogent dependency for commandline option parsing
#22
zaneveld
closed
6 years ago
1
Display Help Text When Run Without Parameters
#21
hoikincheng
closed
6 years ago
1
Fixed format for perturbation files in data/perturbations and added f…
#20
hoikincheng
closed
6 years ago
0
Python2 to Python3 Compatibility
#19
SLPeoples
closed
6 years ago
0
camelCase correction
#18
SLPeoples
closed
6 years ago
0
Take QIIME2 PCoA & Mapping File as input
#17
SLPeoples
opened
6 years ago
0
Extending models to fit cohorts
#16
SLPeoples
closed
6 years ago
0
test_visualization.py
#15
SLPeoples
opened
6 years ago
0
test_spatial_ornstein_uhlenbeck.py
#14
SLPeoples
opened
6 years ago
0
test_perturbation.py
#13
SLPeoples
opened
6 years ago
0
test_experiment.py
#12
SLPeoples
opened
6 years ago
0
Individual time-series quantity accuracy
#11
SLPeoples
opened
6 years ago
0
benchmark_model_fit.py
#10
SLPeoples
closed
6 years ago
0
Output row data (.pc)
#9
SLPeoples
closed
6 years ago
0
Class separation
#8
SLPeoples
closed
6 years ago
0
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