zavolanlab PAQR_KAPAC issues

zavolanlab / PAQR_KAPAC

scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data

GNU General Public License v2.0

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add note and link to new PAQR repo

#23 ninsch3000 closed 2 years ago
1
Re-include UTR length calculations and plot

#22 ninsch3000 closed 2 years ago
1
changes to create the py2 env with other package versions

#21 koljaLanger closed 3 years ago
0
Missing conda packages break creation of py2_paqr environment.

#20 ClarinetK622 closed 3 years ago
2
Errors when running PAQR step2

#19 Sylarair opened 3 years ago
14
minor updates of mRNAseq-coverage-objects-and-wiggleFiles.py and deNo…

#18 koljaLanger closed 3 years ago
0
Intronic polyadenylation quantification

#17 vvdnoord opened 4 years ago
2
attempt to resolve end_idx bug

#16 koljaLanger closed 4 years ago
1
Updating mm10 annotation files with PolyASite 2.0 release

#15 SamBryce-Smith opened 4 years ago
6
Further question about how to properly set up the sample relationships

#14 aleighbrown opened 4 years ago
3
config.yaml has a readlength parameters which is not mentioned in the README

#13 aleighbrown closed 4 years ago
1
Infer relative usage: IndexError: list index out of range

#12 legbar closed 4 years ago
2
Error in rule infer_relative_usage: TypeError: not all arguments converted during string formatting

#11 yangjywhu opened 4 years ago
1
annotation files for hg19

#10 yangjywhu opened 4 years ago
1
Error in rule infer_relative_usage UnboundLocalError: local variable 'end_idx' referenced before assignment

#9 aleighbrown closed 4 years ago
4
snakemake symlink problem

#8 aleighbrown closed 4 years ago
1
Incorrect indentation in one of the scripts.

#7 AngryMaciek opened 4 years ago
3
Error in setting up the environment

#6 jchariker opened 4 years ago
6
use custome annotation

#5 yuxinghai closed 4 years ago
4
Input files for KAPAC

#4 khandarius opened 5 years ago
6
annotation files for mm10

#3 xflicsu closed 5 years ago
2
README missing R and SRA tools version

#2 fgypas closed 5 years ago
1
Error when generating paqr_kapac virtual environment

#1 fgypas closed 5 years ago
4