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zavolanlab
/
htsinfer
Infer metadata for your downstream analysis straight from your RNA-seq data
Apache License 2.0
10
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22
forks
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Test warning for deprecated Pandas feature
#118
uniqueg
closed
1 year ago
0
fix: remove transcript duplicates
#117
balajtimate
closed
1 year ago
6
Remove duplicates from transcripts file
#116
balajtimate
closed
1 year ago
0
STAR fails to create index
#115
balajtimate
closed
1 year ago
5
perf: add adapter fragment
#114
balajtimate
closed
1 year ago
1
Look into potential uses of seqspec
#113
balajtimate
opened
1 year ago
1
refactor: wrap long line
#112
balajtimate
closed
1 year ago
1
test: design testing strategy
#111
balajtimate
closed
1 year ago
2
Run first tests
#110
balajtimate
closed
1 year ago
2
Optimize performance
#109
balajtimate
closed
10 months ago
12
Analyze organism/source
#108
uniqueg
closed
16 hours ago
12
Analyze 3' end adapters
#107
uniqueg
closed
1 year ago
13
Add missing known adapters to adapters file
#106
uniqueg
closed
1 year ago
1
Compile a list of common model organisms to retrieve test samples for
#105
uniqueg
closed
1 year ago
1
Issue 98
#104
balajtimate
closed
1 year ago
0
build: Docker builds without Conda
#103
BorisYourich
closed
1 year ago
1
Infer polyA tail & Conda to Mamba
#102
BorisYourich
closed
1 year ago
5
Change from conda to mamba in CI workflows
#101
BorisYourich
closed
1 year ago
0
Populate reference data matrix
#100
uniqueg
closed
1 year ago
10
feat: infer presence of polyA tail fragments
#99
BorisYourich
closed
1 year ago
6
Design testing strategy
#98
uniqueg
closed
1 year ago
0
refactor: exception handling #94
#97
balajtimate
closed
1 year ago
0
Docker image for the htsinfer project
#96
BorisYourich
closed
1 year ago
1
refactor: pass conf instances, not individual args #92
#95
BorisYourich
closed
1 year ago
4
Handling exceptions to reduce duplicated code
#94
rohank63
closed
1 year ago
0
pytest issue on macOS Big Sur
#93
BorisYourich
closed
1 year ago
3
refactor: pass conf instances, not individual args
#92
BorisYourich
closed
1 year ago
1
test: add unit tests for library orientation
#91
rohank63
closed
1 year ago
2
test: add unit tests for library source inference
#90
rohank63
closed
1 year ago
1
Infer read layout generically
#89
uniqueg
opened
2 years ago
2
Bug fixes
#88
uniqueg
closed
2 years ago
1
Support additional source naming schemes
#87
uniqueg
closed
1 year ago
1
Infer presence of polyA tails in reads
#86
uniqueg
closed
1 year ago
3
Infer library type if sequence identifiers do not contain mate info
#85
uniqueg
closed
1 year ago
7
Refactor argument passing to class instances
#84
uniqueg
closed
1 year ago
0
Implement unit tests for read orientation inference
#83
uniqueg
closed
1 year ago
0
Implement unit tests for library source inference
#82
uniqueg
closed
1 year ago
1
docs: extend main documentation
#81
uniqueg
closed
2 years ago
1
build: add Dockerfile
#80
uniqueg
closed
2 years ago
1
fix(orient): handle sources
#79
uniqueg
closed
2 years ago
0
fix(orientation): handle sources
#78
uniqueg
closed
2 years ago
1
feat: calculate library statistics
#77
uniqueg
closed
2 years ago
0
fix(orient): handle reads with adapters
#76
uniqueg
closed
2 years ago
1
ci: migrate to GH Actions
#75
AngryMaciek
closed
2 years ago
5
ci: move to GitHub Actions
#74
AngryMaciek
closed
2 years ago
1
feat: read orientation
#73
rohank63
closed
2 years ago
1
feat: read_source
#72
rohank63
closed
2 years ago
1
feat(read_layout): determine 3' adapter sequence
#71
rohank63
closed
3 years ago
0
docs: build API docs
#70
uniqueg
closed
3 years ago
0
feat: improve handling of positional args & usage
#69
uniqueg
closed
3 years ago
0
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