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zellerlab
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stag
A hierarchical taxonomic classifier for metagenomic sequences
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10 singel-copy marker genes
#38
INFINITY1993
closed
1 year ago
2
Solve installation issues
#37
AlessioMilanese
closed
2 years ago
0
Fix/various fixes 20220310
#36
cschu
opened
2 years ago
0
Fix/various fixes 20220310
#35
cschu
closed
2 years ago
0
Fix/various fixes 20220310
#34
cschu
closed
2 years ago
0
Add nn classification mp
#33
cschu
closed
3 years ago
0
Prodigal failing on short sequences
#32
AlessioMilanese
opened
3 years ago
1
Refactor/next big cleanup 20210428
#31
AlessioMilanese
closed
3 years ago
0
Refactor/big cleanup_20210128_20210305_20210403
#30
cschu
closed
3 years ago
0
Refactor/create db 20210402
#29
cschu
closed
3 years ago
0
scikit-learn FutureWarning
#28
cschu
opened
3 years ago
0
addressing issue #26
#27
cschu
closed
3 years ago
1
create_db: alignment parsing lets invalid symbols slip by silently
#26
cschu
opened
3 years ago
0
verbose for `stag check_input` not enforced
#25
jakob-wirbel
opened
3 years ago
0
stagdb format is not compatible with later hd5py versions
#24
cschu
opened
3 years ago
0
Refactor/classify genome 20210211
#23
cschu
closed
3 years ago
0
warning when training a STAG database: `Liblinear failed to converge`
#22
AlessioMilanese
opened
3 years ago
0
gtdb89 db link is broken
#21
cschu
closed
3 years ago
1
Refactor/big cleanup 20210128
#20
cschu
closed
3 years ago
0
Hotfix/add stag executable changes to genome mode 20210127
#19
cschu
closed
3 years ago
0
Refactor/make installable 20210123
#18
cschu
closed
3 years ago
0
Is the result of `stag align` deterministic?
#17
AlessioMilanese
closed
3 years ago
1
Version0.7
#16
AlessioMilanese
closed
3 years ago
0
Version0.6
#15
AlessioMilanese
closed
3 years ago
0
fasta headers for stag align
#14
karchern
opened
4 years ago
0
warning file of check_input is long and not well formated
#13
karchern
closed
3 years ago
1
stag check_input does not check for allowed characters
#12
jakob-wirbel
closed
3 years ago
7
Always predict level -1
#11
AlessioMilanese
closed
4 years ago
2
Error when loading the database in `stag classify`
#10
AlessioMilanese
opened
4 years ago
2
Database uses too much space
#9
AlessioMilanese
opened
4 years ago
1
Have more balanced classes for training
#8
AlessioMilanese
opened
4 years ago
1
Classifier with too many sequences
#7
AlessioMilanese
closed
4 years ago
1
align too many sequences
#6
AlessioMilanese
closed
4 years ago
1
Recursion limit
#5
AlessioMilanese
closed
4 years ago
1
Save the result from the `align` routine to a .gz file
#4
AlessioMilanese
opened
4 years ago
0
alignment using proteins instead of genes
#3
AlessioMilanese
closed
4 years ago
1
fastq input
#2
AlessioMilanese
closed
4 years ago
1
the align function doesn't work when creating a file
#1
AlessioMilanese
closed
4 years ago
2