zhanxw seqminer issues - Githubissues

zhanxw / seqminer

Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R

http://zhanxw.github.io/seqminer/

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issues

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Fix buffer overflows

#29 pekkarr closed 9 months ago
0
Configuration fails with missing -fPIE

#28 Balthasar-eu opened 1 year ago
0
not being able to read a tabix file over http

#27 Asppagh opened 1 year ago
1
`readVCFToListByRange`: Report 'VCF/BCF Files does not have header!'

#26 bschilder opened 2 years ago
1
`tabix.createIndex`: [ti_index_core] the file out of order at line ####

#25 bschilder opened 2 years ago
0
gcc11 requires -fPIE

#24 kollienne opened 2 years ago
1
Can seqminer reads and merges these large GWAS files?

#23 jielab opened 2 years ago
0
`tabix.read.table`: Error: Error: non-character argument

#22 bschilder opened 2 years ago
1
seqminer::tabix.read Aborted (core dumped)

#21 yulijia closed 3 years ago
1
`tabix.read` remote files

#20 bschilder opened 3 years ago
3
BGEN to Matrix variant IDs

#19 joshuahoffman39 opened 3 years ago
0
How is seqminer treating missing data?

#18 garyzhubc opened 3 years ago
0
seqminer is missing some SNPs in range compared to PLINK

#17 garyzhubc opened 3 years ago
1
seqminer memory requirement

#16 garyzhubc opened 3 years ago
0
readBGENToMatrixByRange cannot found variants but not so after pruning by PLINK2

#15 garyzhubc opened 3 years ago
3
question: readPlinkToMatrixByIndex

#14 complexgenome opened 3 years ago
0
Allele T gets converted to TRUE

#13 zx8754 opened 4 years ago
1
New features for seqminer (8.0)

#12 WenjianBI opened 4 years ago
6
install issue

#11 xueweic opened 4 years ago
1
Add benchmark script

#10 yang-lina closed 4 years ago
2
Missing license version

#9 jenzopr closed 4 years ago
2
Support for csi index

#8 mmoisse opened 5 years ago
1
Cannot install package “ERROR: no information for variable 'CXX11', 'CXX11STD' and 'CXX11FLAGS'”

#7 isinaltinkaya closed 4 years ago
3
Fix bug where only the first range would be checked

#6 timoast closed 5 years ago
1
Change parameter names in annotate functions

#5 SRenan closed 7 years ago
1
Fix for compilation on intel, and flag POSIX source

#4 dtrudg closed 9 years ago
0
Feature request: region as chromosome on its own.

#3 zx8754 closed 9 years ago
5
tabix.read.table crashes R

#2 zx8754 closed 9 years ago
2
Add a Bitdeli Badge to README

#1 bitdeli-chef closed 10 years ago
0