NemaNode

Interactive map of nervous system wiring in the nematode C. elegans. Live at NemaNode.org.

Required software

• Node.js >= 11.15.0
• MySQL >= 5.6
• GCC/g++ compiler

Development setup

1. Setup MySQL if first-time use: sudo mysql_secure_installation
2. Install app dependencies by running npm install
3. Setup MySQL user and database: scripts/setup_config.sh nemanode nemanode_user password | sudo mysql
4. Populate database: npm run populate-database

Commands

Once setup is completed, you will be able to run the following commands in this project directory:

• npm run watch or npm start: start a app server to test alongside development (localhost:3000)
• npm run build-prod: build the production version of the app
• npm run test: run the tests
• populate-database: take the raw data in src/server/db/raw-data and populate the mysql db with it

Documentation

For more information on how to do various things read the documentation

• Understanding the data used in nemanode
• Adding new data to nemanode
• Deployment to AWS