search

zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
42 stars 15 forks source link

-bash: giremi: cannot execute binary file #12

Open HungerNature opened 8 years ago

HungerNature commented 8 years ago

After I download and unzip the giremi software(version 0.2.1). I got three files name "giremi" "giremi.r" and "README.md", all of it are binary file that I couldn't open it. And I had add the directory to environment PATH. But after I run command 'giremi' or 'giremi -h' or 'giremi -help', it give me the error message "-bash: giremi: cannot execute binary file", I had search the error message in google, but I found nothing about it. Could you tell me where I take a mistake?

zhqingit commented 8 years ago

Hi,

You can use "chmod 755 giremi" to make it executable. And the README.md file can be opened by any text editor.

Best, Qing

2016-04-07 22:37 GMT-07:00 HungerNature notifications@github.com:

After I download and unzip the giremi software(version 0.2.1). I got three files name "giremi" "giremi.r" and "README.md", all of it are binary file that I couldn't open it. And I had add the directory to environment PATH. But after I run command 'giremi' or 'giremi -h' or 'giremi -help', it give me the error message "-bash: giremi: cannot execute binary file", I had search the error message in google, but I found nothing about it. Could you tell me where I take a mistake?

— You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub https://github.com/zhqingit/giremi/issues/12

HungerNature commented 8 years ago

Thanks for your kindly. But it might not be the problem of permissions of file. This is the results after I excute the bash command "ll". And I had tried to open README.md with Vim on linux system and Notepad++ editor on Windows 7 system. It can be open,but it is binary file,we couldn't read it.

RESULTS: [nh@node6 giremi-0.2.1]$ ll total 0 -rwxrwxr-x 1 nh nh 172924 Apr 13 2015 giremi -rwxrwxr-x 1 nh nh 3101 Apr 13 2015 giremi.r -rw-rw-r-- 1 nh nh 5322 Apr 13 2015 README.md

zhqingit commented 8 years ago

Hi,

Did you manually download these files? I think you can use "git clone" to get them.

Best, Qing

2016-04-08 1:19 GMT-07:00 HungerNature notifications@github.com:

Thanks for your kindly. But it might not be the problem of permissions of file. This is the results after I excute the bash command "ll". And I had tried to open README.md with Vim on linux system and Notepad++ editor on Windows 7 system. It can be open,but it is binary file,we couldn't read it.

RESULTS: [nh@node6 giremi-0.2.1]$ ll total 0 -rwxrwxr-x 1 nh nh 172924 Apr 13 2015 giremi -rwxrwxr-x 1 nh nh 3101 Apr 13 2015 giremi.r -rw-rw-r-- 1 nh nh 5322 Apr 13 2015 README.md

— You are receiving this because you commented. Reply to this email directly or view it on GitHub https://github.com/zhqingit/giremi/issues/12#issuecomment-207305168

HungerNature commented 8 years ago

Thanks a lot! I downloaded these files from "https://github.com/zhqingit/giremi/releases". And according to your suggests. I used the command line "git clone git://github.com/zhqingit/giremi". It works very well.