Open ghost opened 8 years ago
Hi Adar,
For the "error: repeat snv", I think your SNV list file includes the repeat SNV, which some times cause the results wired. So please remove them. For the issue "can't open giremi.r", I wonder if you can re-download the giremi.r and re-run it.
Best, Qing
2016-05-31 22:21 GMT-07:00 adarmaxomov notifications@github.com:
I tried to use GIREMI for RNA-editing detection. Unfortunately, the ifRNAE column is not printed to the output file. The reason is probably that the main executable can't locate and open the giremi.r script as indicated in the output.Rout file:
Fatal error: cannot open file 'giremi.r': No such file or directory
The R script is found, of course, within the same directory as the giremi executable. I'll appreciate your help in understanding what can cause this sort of problem and how to fix it.
Additionally, while running a massage reads "error: repeat snv" is printed numerous times to the screen. What is the cause to this error?
Best, Adar
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Hi, I also get the output Rout file: Fatal error: cannot open file 'giremi.r': No such file or directory
And I try to re-download the giremi.r and re-run it. But it doesn't help. Are there any other solutions?
Thanks, Ting
I tried to use GIREMI for RNA-editing detection. Unfortunately, the ifRNAE column is not printed to the output file. The reason is probably that the main executable can't locate and open the giremi.r script as indicated in the output.Rout file:
Fatal error: cannot open file 'giremi.r': No such file or directory
The R script is found, of course, within the same directory as the giremi executable. I'll appreciate your help in understanding what can cause this sort of problem and how to fix it.
Additionally, while running a massage reads "error: repeat snv" is printed numerous times to the screen. What is the cause to this error?
Best, Adar