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zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
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SNV File Format #29

Open carlshotwell opened 7 years ago

carlshotwell commented 7 years ago

Hi I am relatively new to bioinformatics and I was wondering how you formatted the vcf file to the 6 columns. Did you write a python script or something for this?

zhqingit commented 7 years ago

Hi,

I don't have the script in hand. But I think it's very easy. You can write it by yourself. Make sure you have gene, SNP and strand information in the file.

Best, Qing

2017-01-23 8:56 GMT-07:00 carlshotwell notifications@github.com:

Hi I am relatively new to bioinformatics and I was wondering how you formatted the vcf file to the 6 columns. Did you write a python script or something for this?

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carlshotwell commented 7 years ago

Okay Thanks! I just wanted to make sure that I didn't do anything wrong.