Open felipeadgr opened 7 years ago
Hi Felipe,
I suggest you run all chromosomes together. The format of the input file that GIREMI requires can be found at https://github.com/zhqingit/giremi. You can use the dbSNP to filter the SNVs.
Please let me know freely if you have any questions.
Best, Qing
2017-06-07 3:42 GMT-07:00 felipeadgr notifications@github.com:
Hi, I am trying to use GIREMI but I am not sure which public SNPs should be used. (1) Should I use the VCF format? (2) Do I run GIREMI for each chromosome separately?
Best,
Felipe
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/zhqingit/giremi/issues/34, or mute the thread https://github.com/notifications/unsubscribe-auth/ALL2zdaWtfhHOP0HJVEBWM2IvHkteShoks5sBn6DgaJpZM4Nyha3 .
Hi, I am trying to use GIREMI but I am not sure which public SNPs should be used. (1) Should I use the VCF format? (2) Do I run GIREMI for each chromosome separately?
Best,
Felipe