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zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
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Is it possible not to input SNV list? #35

Open XMaBio opened 7 years ago

XMaBio commented 7 years ago

Hi, Qing, I only have RNA-seq data, is it possible not to input SNV list data when running GIREMI? Thanks!

zhqingit commented 7 years ago

Hi Xuan,

giremi needs the SNV list. You can call SNVs from RNA-seq and then feed them to GIREMI. Thanks.

Best, Qing

2017-06-16 5:57 GMT-07:00 Xuan Ma notifications@github.com:

Hi, Qing, I only have RNA-seq data, is it possible not to input SNV list data when running GIREMI? Thanks!

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XMaBio commented 7 years ago

Hi，Qing, Thank you very much for your answer! Best, Xuan