Open mj163163 opened 6 years ago
I encountered the same problem and made a temporary solution.
The problem is that the R-script cannot handle missing values created by the GIREMI replace the line for data loading by dat <- read.csv(file=finput,header=T,comment.char="", sep='\t', na.strings=c("","NA")) will do the trick. However, I ended up with other problem with empty training set, due to large p-values. Anyway. the pro-processing script is confusing in my opinion.
Dear, after running the programme, I got this:
Could you give me some demo data to run this programme? like snp file, bam files. How can I get snp files for -l ? I know little about snp, thank you!
Best, Doc. Fan