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zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
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Segmentation fault (core dumped) #47

Open Li-Michael opened 6 years ago

Li-Michael commented 6 years ago

Hi~ when I try to use giremi, my comman line is as follows:

/opt/software/GIREMI/giremi-0.2.1/giremi -f /data/database/hgdownload.cse.ucsc.edu/Hg38-bwa/hg38.fa -l var.snp_filter.giremi.vcf -o test.giremi.txt ec118.bwa.sort.bam

but this error always appears: [mpileup] 1 samples in 1 input files Segmentation fault (core dumped)

What is wrong with it? Thank U!!

Li-Michael commented 6 years ago

Hi～ Maybe the most important info is the version of the softwares:

  1. plateform
  2. samtools htslib R, which version should I download?
Mace0826 commented 6 years ago

I encountered the same problem as above.

youshuling commented 4 years ago

I encountered the same problem as above.