Hi,
I've get the SNV list by using STAR and GATK. But the output vcf file don't have the information like the name of the gene harboring this SNV, strand of SNV and whether the SNV belongs to dbSNP. So I just want to know if I need to use annotation tools like annovar, SnpEff to annotate the vcf file and then try get the Giremi input file.
Hi, I've get the SNV list by using STAR and GATK. But the output vcf file don't have the information like the name of the gene harboring this SNV, strand of SNV and whether the SNV belongs to dbSNP. So I just want to know if I need to use annotation tools like annovar, SnpEff to annotate the vcf file and then try get the Giremi input file.
Thanks.