First of all thank you for a great tool. While running GIREMI we encountered an error. Below is the terminal error:
[mpileup] 1 samples in 1 input files
Calculating the MI values...
meanMI:0.245166 sdMI:0.330423
Estimating the allelic ratios...
R CMD BATCH --no-save --no-restore '--args finput="RNAE.lst" fout="RNAE.lst.res"' giremi.r RNAE.lst.Rout
Analysis DONE!
The Rout file error is the following:
dat <- read.table(file=finput,header=F,row.names=1,comment.char="")
dat <- read.table(file=finput,header=T,comment.char="")
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 98 did not have 24 elements
Calls: read.table -> scan
Execution halted
Our input .txt file did not include multiple SNPs for a single site. We would be happy if you could help.
Dr. Qing,
First of all thank you for a great tool. While running GIREMI we encountered an error. Below is the terminal error:
[mpileup] 1 samples in 1 input files Calculating the MI values... meanMI:0.245166 sdMI:0.330423 Estimating the allelic ratios... R CMD BATCH --no-save --no-restore '--args finput="RNAE.lst" fout="RNAE.lst.res"' giremi.r RNAE.lst.Rout Analysis DONE!
The Rout file error is the following:
dat <- read.table(file=finput,header=F,row.names=1,comment.char="")
Our input .txt file did not include multiple SNPs for a single site. We would be happy if you could help.
Regards, Farid Ahadli