Open JasminZarah opened 1 year ago
Hi,
I'm having an issue after human genome alignment. I followed these steps before encounter this issue:
This is the command that creates the issue:
$ samtools mpileup -E -uf GRCh37.genome.fa name_sorted.bam > name.mpileup
[fai_fetch_seq] The sequence "10" not found [fai_fetch_seq] The sequence "10" not found
How can I get the .vcf files? Am I use the genome index instead of the genome.fa?
Thanks a lot
Hi,
I'm having an issue after human genome alignment. I followed these steps before encounter this issue:
This is the command that creates the issue:
$ samtools mpileup -E -uf GRCh37.genome.fa name_sorted.bam > name.mpileup
[fai_fetch_seq] The sequence "10" not found [fai_fetch_seq] The sequence "10" not found
How can I get the .vcf files? Am I use the genome index instead of the genome.fa?
Thanks a lot