Can you provide a set of sample input file?

zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.

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Can you provide a set of sample input file? #7

Open bighole1972 opened 8 years ago

bighole1972 commented 8 years ago

Hi Qing, I've been trying to run giremi, but I'm not able to figure out how to get it to work properly. Unlike other issuse, I always get a "meanMI: -nan sdMI: -nan", and bases near SNV sites are not 'N'. So would you mind to provide a demo data for the -f, -l option and the bam file? I think this will be very helpful for us to run giremi.

Best, Thurber

zhqingit commented 8 years ago

Hi Thurber,

Can you send me your output file? Then I can check the problem.

Best, Qing