Closed narangsign closed 8 years ago
Hi,
Your SNV list file includes only the homozygous SNPs.
Best, Qing
2016-03-14 23:12 GMT-07:00 Vipin notifications@github.com:
Hi Qing,
I am also getting error while running giremi.r:
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 0, 1 Calls: cbind -> cbind -> data.frame Execution halted
I have attached my giremi output files. Please help!
giremi_output.Rout.txt https://github.com/zhqingit/giremi/files/173348/giremi_output.Rout.txt
giremi_output.zip https://github.com/zhqingit/giremi/files/173350/giremi_output.zip
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Hi Qing,
Thanks for your prompt reply. Yes, most SNPs in my data are homozygous but a few are not. Will giremi not work for this type of dataset?
As others have also requested in the forum, can you please provide a set of sample input files for reference. It will help us a lot to check our data.
Best,
HI,
The homozygous SNPs can cause the MI calculation and allelic ratio estimation problems. Please remove them.
Please find the sample file in this issue: #4
Best, Qing
Thanks, my question is answered. I am closing this thread.
Hi Qing,
I am also getting error while running giremi.r:
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 0, 1 Calls: cbind -> cbind -> data.frame Execution halted
I have attached my giremi output files. Please help!
giremi_output.Rout.txt
giremi_output.zip