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zqfang / GSEApy

Gene Set Enrichment Analysis in Python
http://gseapy.rtfd.io/
BSD 3-Clause "New" or "Revised" License
544 stars 113 forks source link

two gene sets GSEA, DGSEA module #197

Open abearab opened 1 year ago

abearab commented 1 year ago

Also requested here https://github.com/MaayanLab/blitzgsea/issues/7

Is there any chance that you can implement DGSEA in python as part of your package? https://academic.oup.com/bioinformatics/article/36/21/5247/5874441 https://jamesjoly.github.io/DGSEA/about/ https://github.com/JamesJoly/DGSEA (developed by @JamesJoly in R)

zqfang commented 1 year ago

I'll look at this when I have free time.

abearab commented 1 year ago

cool, thanks!! looking forward to test it.