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zqfang / GSEApy

Gene Set Enrichment Analysis in Python
http://gseapy.rtfd.io/
BSD 3-Clause "New" or "Revised" License
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Can we get correct p-values and FDRs in ssgsea now? #223

Open Peevin opened 1 year ago

Peevin commented 1 year ago

Hi, thank you so much for your charming implementation. I saw in your GitHub issue responses that ssgsea couldn't obtain correct p-values and FDRs, but that was in 2019. Has this issue been fixed now, and can we obtain correct p-values and FDRs by setting the permutation parameter in ssgsea?

zqfang commented 1 year ago

I'm sorry. FDR and p-values for ssGSEA won't be implemented.