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zstephens
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neat-genreads
NEAT read simulation tools
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Bug in golden.bam for InDels
#56
ju-mu
closed
5 years ago
9
Allelic fraction of input variant
#55
pratikchandrani
opened
5 years ago
6
pip installable package?
#54
astewart-twist
opened
5 years ago
0
UnboundLocalError: local variable 'havePrinted100' referenced before assignment
#53
DTNeil
closed
4 years ago
1
Recommendation for SyntaxError: Missing parentheses in call to 'print' . (Python 3)
#52
LindoNkambule
closed
4 years ago
1
Exact Coverage
#51
danablanc
closed
4 years ago
2
Asking for help about the error
#50
AlkaidWang
closed
6 years ago
0
ZeroDivisionError: float division by zero when computingGC.
#49
shathaa92
opened
6 years ago
2
random seed not working?
#48
astewart-twist
closed
5 years ago
2
Circular dependency import
#47
astewart-twist
closed
6 years ago
4
struct.error: ushort format requires 0 <= number <= USHRT_MAX
#46
paulhager
closed
6 years ago
2
Fixed the discrepancy between CIGAR and seq length. Made samtools complain
#45
thondeboer
closed
6 years ago
1
Error adding read groups to golden bam file
#44
afzm
opened
6 years ago
0
This package is now available as a GALAXY toolshed tool
#43
thon-deboer
closed
4 years ago
0
matplotlib imported in genMutModel but not used
#42
thondeboer
closed
6 years ago
2
Attempting to insert variant out of window bounds
#41
bmscicho
closed
6 years ago
1
Error indexing golden.bam
#40
afzm
closed
6 years ago
1
Is there a galaxy tool-shed version of this somewhere?
#39
thon-deboer
closed
6 years ago
2
Masked reference genome Error
#38
afzm
closed
6 years ago
4
Bug in vcf-only generation
#37
bmscicho
closed
6 years ago
2
there is no AF information in golden_vcf
#36
lituan
closed
6 years ago
3
Parsing errors with samtools
#35
JustinChu
closed
6 years ago
9
IndexError in SequenceContainer.py line 67
#34
bmscicho
closed
6 years ago
2
Reversed base qualities in the second generated FASTQ file
#33
bmscicho
closed
6 years ago
4
Bug in genSeqErrorModel.py -i2 option
#32
bmscicho
closed
6 years ago
2
Add shebang
#31
johanneskoester
closed
6 years ago
0
--pe parameter question
#30
Eric4Wu
opened
6 years ago
3
Error distribution adjused with -E lower than expected
#29
JustinChu
opened
6 years ago
1
No reverse strand?
#28
sert23
closed
4 years ago
2
The -t parameter doesnt seem to be working
#27
sert23
closed
4 years ago
4
The parameter setting
#26
phoebee-h
closed
7 years ago
3
Generating paired tumor/normal sequence
#25
phoebee-h
closed
4 years ago
3
Added Python shebang
#24
niemasd
closed
7 years ago
0
Monoploid issues with VCF
#23
jrkirk61
closed
7 years ago
1
Issue with targeted region simulation
#22
mh1111
closed
7 years ago
9
Any way to compare bam?
#21
hh1985
opened
7 years ago
0
Using the --no-fastq option with --bam
#20
sbbundho
closed
7 years ago
1
Error while generating Tumor Normal Pair
#19
sbbundho
closed
7 years ago
1
ZeroDivisionError when specifying -to option to be 0
#18
sbbundho
closed
7 years ago
1
Missing trinucleotide frequency key if none found [neat-genreads/utilities/genMutModel.py]
#17
mrweber2
closed
7 years ago
1
-t targeted region bed file doesn't work
#16
baohua100
closed
7 years ago
1
Coverage too low
#15
muppetjones
opened
7 years ago
2
Threads exit when given VCF
#14
muppetjones
opened
7 years ago
2
Memory leak
#13
muppetjones
closed
7 years ago
2
Possible Error
#12
muppetjones
closed
7 years ago
1
This job id has no regions to process, exiting...
#11
muppetjones
closed
7 years ago
2
Memory error (coverage/threads optimization)
#10
muppetjones
closed
7 years ago
3
Error if '--bam' missing
#9
muppetjones
closed
7 years ago
1
Empty Golden VCF
#8
muppetjones
closed
7 years ago
7
Something went wrong
#7
muppetjones
closed
7 years ago
8
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