zyndagj BSMAPz issues - Githubissues

zyndagj / BSMAPz

Updated and optimized fork of BSMAP

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issues

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methratio.py ERROR in conda and multicores of CPU: list index out of range

#47 rainoffallingstar opened 9 months ago
0
How to calculate sequencing depth

#46 bigfacebig opened 1 year ago
1
methratio.py memory issue

#45 Nitin123-4 opened 1 year ago
0
"AssertionError: String length does not match CIGAR" when running methratio.py

#44 grasscarp opened 1 year ago
0
Methratio.py does not handle files

#43 Akshaygala closed 2 years ago
4
methratio.py AssertionError

#42 animaltracks7 opened 2 years ago
3
When I run the script I get the error CMD: R --vanilla

#41 sundongfang opened 2 years ago
1
"Illegal instruction" message when I launch bsmapz

#40 francescasci91 opened 2 years ago
0
methdiff.py error

#39 Albacc15 opened 2 years ago
1
OverflowError in methratio.py

#38 NaKent opened 3 years ago
0
methratio.py and Identification of methylated cytosine sites

#37 gill0110 opened 3 years ago
0
Segmentation fault - core dumped

#36 geethavenk opened 3 years ago
0
ZeroDivisionError

#35 NaKent closed 3 years ago
4
Significantly different in number of covered cytosines between bsmap 2.90 and BSMAPz

#34 PengNi closed 3 years ago
4
ZeroDivisionError: float division by zero

#33 praxsubba closed 3 years ago
1
methratio.py error

#32 Pashu912 closed 3 years ago
0
Float point error in methratio.py

#31 tuhina3184 opened 3 years ago
4
Updated CT SNP to correctly handle no-action

#30 zyndagj closed 4 years ago
1
query regarding methylation level from methylratio output file.

#29 CS791 closed 4 years ago
1
methratio exception

#28 eitanmarcus opened 4 years ago
8
Segmentation Fault when Loading Reference

#27 madeluis closed 4 years ago
3
Hotfix/refcache fix

#26 zyndagj closed 4 years ago
0
Should fix refcache issues

#25 zyndagj closed 4 years ago
0
Hotfix/refcache fix

#24 zyndagj closed 4 years ago
0
Hotfix/refcache fix

#23 zyndagj closed 4 years ago
0
methratio.py OverflowError

#22 rmvpaeme closed 4 years ago
5
Feature/py3

#21 zyndagj opened 4 years ago
0
SAM2BAM conversion not sucessful

#20 CS791 closed 4 years ago
1
buffer overflow detected***

#19 CS791 opened 4 years ago
8
bsmapz -h returns exit-code 1

#18 Darkless012 opened 4 years ago
0
Requirements in README doesn't mention zlib.

#17 Darkless012 closed 4 years ago
0
methratio.py still cannot work on python3

#16 lemonskiller opened 4 years ago
2
methratio.py 'S not a valid CIGAR character'

#15 mdraminski opened 4 years ago
5
installation problem

#14 bigpocho closed 4 years ago
3
Fix/methdiff ratio (#12)

#13 zyndagj closed 4 years ago
0
Fix/methdiff ratio

#12 zyndagj closed 4 years ago
0
Differences to original 2.90?

#11 sklages closed 5 years ago
1
methratio.py -t end repair option does not work

#10 tAndreani opened 5 years ago
3
Merging for 1.1 release

#9 zyndagj closed 5 years ago
0
Overlapping reads leads to different results with bsp and bam/sam inputs

#8 zyndagj closed 5 years ago
1
methratio.py: samtools view: invalid option -- 'X'

#7 SarkaS closed 5 years ago
4
Pull in changes for v1.0

#6 zyndagj closed 5 years ago
0
bsmap bigwig format

#5 dorothyzh closed 6 years ago
2
Questions about the bam output

#4 dingailuma closed 6 years ago
2
methdiff.py error

#3 Yoshihiro-handa closed 4 years ago
15
pair orientation

#2 lpantano closed 8 years ago
4
issue with methylratio.py

#1 lpantano closed 8 years ago
2