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zyxue
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ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
MIT License
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Can this work in a python script (without the need for it to run in command-line)?
#26
xiaodre21
opened
2 months ago
0
How use your script to trace protein ID based on its tax ID？
#25
Xueliang24
opened
1 year ago
2
Could not find a version that satisfies the requirement
#24
ParthKRaval
closed
1 year ago
4
Could not get any output
#23
eray-sahin
closed
1 year ago
4
support py39
#22
zyxue
closed
2 years ago
0
Error in installation
#21
binitl
closed
2 years ago
1
Arrange lineages according to taxonomic hierarchy
#20
josuebarrera
closed
2 years ago
1
use os.path.join when making tmp_output
#19
zyxue
closed
2 years ago
0
factored out lineage.py, rewrote multiprocessing to converting tax_id fix #15
#18
zyxue
closed
2 years ago
0
suggestion: output lineage tax id instead of full name
#17
mewu3
opened
2 years ago
5
pip install error
#16
mewu3
closed
2 years ago
1
KeyError: 1
#15
bpil83
closed
2 years ago
15
~\multiprocessing\pool.py", line 771, in get raise self._value: KeyError: 1
#14
naurasd
closed
3 years ago
11
Does this still work with current taxonomy dump?
#13
tgolubch
closed
4 years ago
6
Error in installation
#12
zousm912zou
closed
4 years ago
3
make mypy and pylint pass
#11
zyxue
closed
4 years ago
0
make mypy and pylint pass
#10
zyxue
closed
4 years ago
0
adopted poetry, modernized the code (Python-3.7, typing, etc.)
#9
zyxue
closed
4 years ago
0
How to use your script?
#8
nicolereynolds1
closed
4 years ago
2
conda create env fails due to package versions
#7
splaisan
closed
4 years ago
1
Export no ranks lineage from ncbi files.
#6
tfrcarvalho
closed
5 years ago
0
fix gzip output error
#5
alienzj
closed
5 years ago
1
problem
#4
lfaino
closed
5 years ago
2
Can't seem to get this running on my mac
#3
hepcat72
closed
6 years ago
20
All taxids
#2
cdebourcy
closed
6 years ago
0
problems with the lineages.csv.gz
#1
65degnorth
closed
7 years ago
4