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10XGenomics
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cellranger
10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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How the clonotypes are defined by cellranger vdj?
#51
YiweiNiu
closed
10 months ago
2
Error message is not printed during cellranger-atac mkref
#50
lparsons
closed
10 months ago
0
cellranger count-error fetching fastq file
#49
Chenmengpin
closed
10 months ago
1
STAR not listening to --localcores
#48
kehey
closed
4 years ago
1
Considering release python modules to pypi or as separate repos?
#47
nh3
closed
4 years ago
1
Handling Evrogen Mint PlugOligo-1 adapter sequences
#46
chris-rands
closed
4 years ago
2
vdj with gamma delta libraries
#45
sschattgen
closed
10 months ago
3
Suggestion to explore scaling of gene counts to further reduce PCR amplification biases from information about number of molecule duplicates per gene.
#44
johan-gson
closed
4 years ago
1
no proper error reported when flags do not match?
#43
brianpenghe
closed
4 years ago
0
SC_ATAC_COUNTER_CS getting too big
#42
brianpenghe
closed
4 years ago
1
mrp: command not found
#41
tiramisutes
closed
5 years ago
5
[question] on bcl2fastq trimming options
#40
sunta3iouxos
closed
10 months ago
0
More strict parsing of GTF during mkref
#39
lparsons
closed
10 months ago
3
How to download older version of cellranger-3.0.2? Why isn't it in the Software Downloads page?
#38
Sophia409
closed
4 years ago
2
cellranger vdj exist status 101
#37
aqzas
closed
10 months ago
3
cellranger aggr - edge case error
#36
cchrysostomou
closed
10 months ago
1
cellranger count error exit status 2
#35
lucyele
closed
5 years ago
2
Error installing and running cellranger
#34
quanphan08
closed
3 years ago
6
cellranger count not recognizing --libraries instead of --fastqs
#33
ibseq
closed
10 months ago
0
cellranger mkgtf error
#32
swokybio
closed
5 years ago
2
cellranger mkfastq run param not accept space in path
#31
GHAStVHenry
closed
10 months ago
0
cellranger mkfastq file issues
#30
megara23
closed
10 months ago
0
Allow user to specify temp directory
#29
chrisamiller
closed
10 months ago
1
The same sample analysis use cellranger version 2.0.2 and version 3.0.2 quite differents
#28
SeadonXing
closed
4 years ago
1
Incomplete build instructions
#27
hisplan
closed
10 months ago
0
inquery for gene-expression matrix with replicates
#26
elfore
closed
5 years ago
1
Adjust the default setting to speed up read alignment
#25
y9c
closed
10 months ago
2
how to filter out mouse cells to get a matrix only contained human cells from a mixture library by cellranger?
#24
mzhoufulai
closed
4 years ago
9
CellRanger aggr with batch option error
#23
mcfefa
closed
10 months ago
0
Cellranger v 3.0.1
#22
mckinsel
closed
5 years ago
1
Error: testrun
#21
lijie0328
closed
4 years ago
1
How to analysis the single cell infected by the virus by cellranger ?
#20
SeadonXing
closed
4 years ago
1
How to get unmapped raw PAIRED FASTQ reads files by running CellRanger
#19
SeadonXing
closed
4 years ago
2
mkref
#18
ngolan1
closed
3 years ago
3
returned non-zero exit status 1
#17
francisfa
closed
4 years ago
14
I have customized the length of the barcode and the length of the UMI
#16
cwt1
closed
4 years ago
1
how to download fastqs from https://support.10xgenomics.com/single-cell-gene-expression/datasets
#15
worker000000
closed
5 years ago
1
Missing XS attribute
#14
sridhar0605
closed
4 years ago
3
Genes missing from index after cellranger mkref
#13
ewitt1093
closed
6 years ago
0
10x 5prime results reproducibility
#12
Hoohm
closed
4 years ago
1
license clarification
#11
carandraug
closed
3 years ago
2
How can i make csv from data of cellranger?
#10
Yoon-Seob-Kim
closed
5 years ago
4
cellranger count: bad argument handling
#9
cschu
closed
4 years ago
1
naming of jobmanager templates, `*.template` versus `*.template.example`
#8
jbloom
closed
6 years ago
5
Use a different colormap/palette in gene expression visualizations
#7
wflynny
closed
4 years ago
1
Issue with bcl2fastq
#6
sbhattacharya3
closed
6 years ago
1
Issue with mkref
#5
sbhattacharya3
closed
6 years ago
2
Out of sync with CR tarball
#4
mckinsel
closed
6 years ago
4
TypeError: len() of unsized object
#3
konsolerr
closed
6 years ago
1
STAR aligner call / UMI collapsed temp data
#2
sklages
closed
6 years ago
2
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