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23andMe
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yhaplo
Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
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Yhaplo analysis on UK Biobank data
#40
jielab
opened
3 days ago
8
Port minor updates
#39
dpoznik
closed
2 weeks ago
0
Successfully installed UNKNOWN-2.1.12.dev3+g86c9b95
#38
jielab
closed
1 month ago
7
BT-M42 calls in some samples
#37
jaurbanChicago
opened
1 month ago
1
Abstract out platform data loading
#36
dpoznik
closed
1 month ago
0
Use Ruff to sort imports
#35
dpoznik
closed
2 months ago
0
Use Ruff and address violations thereof
#34
dpoznik
closed
2 months ago
0
Add `Tree.generate_tree_table` method
#33
dpoznik
closed
2 months ago
0
List SNPs associated with a given queried haplogroup
#32
dpoznik
closed
2 months ago
0
Use list comparison in test
#31
dpoznik
closed
3 months ago
0
Reset `Node.hg_snp_set` when `Tree` is reinstantiated
#30
dpoznik
closed
3 months ago
0
Add `--haplogroup_query` option
#29
dpoznik
closed
3 months ago
0
Add `SNP.info` property and call it from `Tree.query_snp_path`
#28
dpoznik
closed
4 months ago
0
Unrotate Newick representation
#27
dpoznik
closed
4 months ago
0
Add various tree utilities
#26
dpoznik
closed
5 months ago
0
Sync minor changes
#25
dpoznik
closed
5 months ago
0
Identify and correct errors in ISOGG variant metadata
#24
dpoznik
closed
6 months ago
0
the problems in installation
#23
XiaoleLei
closed
9 months ago
3
Add BCF support and refactor
#22
dpoznik
closed
9 months ago
0
Updating ISOGG input
#20
anninakarolina
closed
2 years ago
3
Reformat with black and isort
#19
dpoznik
closed
3 years ago
0
About the 1000 Genomes dataset
#18
Caiyong-Yin
closed
3 years ago
2
Run yhaplo on b38 VCF files
#17
dwuab
closed
3 years ago
1
Gold standard 1000 genomes haplogroups
#16
stephenturner
closed
3 years ago
5
Update test script
#15
dpoznik
closed
3 years ago
0
Make pip installable
#14
dpoznik
closed
3 years ago
1
Update for Python 3 compatibility
#13
dpoznik
closed
4 years ago
0
ERROR. Attempted to access haplogroup before assigned:
#12
rozaimirazali
closed
5 years ago
1
csv.Error: field larger than field limit (131072)
#11
rozaimirazali
closed
5 years ago
2
Bioconda Package
#10
apeltzer
closed
5 years ago
3
Updating ISOGG reference
#9
teepean
closed
5 years ago
1
fixes for sequencing data
#8
dpoznik
closed
5 years ago
0
Create yy''y'y'y'
#7
ojaeaer
closed
6 years ago
0
Enabling yHaplo to be used with incomplete SNP data and investigate haplogroup delineation more easily
#6
alexhbnr
closed
5 years ago
3
More clear guidance as to chrY SNP count requirements
#5
bryketos
closed
6 years ago
3
Initial Update
#4
pyup-bot
closed
5 years ago
0
Update to new versions of ISOGG Y-DNA haplogroup tree
#3
alexhbnr
closed
6 years ago
3
Add initial test and setup.py
#2
speedarius
closed
7 years ago
0
Speedarius/make batchable
#1
speedarius
closed
7 years ago
1