issues
search
38
/
d4-format
The D4 Quantitative Data Format
MIT License
150
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Efficiently summing coverage tracks from multiple d4 files
#82
percyfal
opened
2 weeks ago
0
New stat function: % of positions in intervals with coverage >X
#81
Jakob37
opened
3 weeks ago
6
Wrong mean coverage values from indexed d4 file
#80
Jakob37
opened
1 month ago
0
Fix coverage spillover bug
#79
Jakob37
closed
3 weeks ago
6
Occasionally large differences in coverage for same gene region in same sample
#78
Jakob37
closed
3 weeks ago
10
add -L to curl in build_htslib
#77
cademirch
closed
3 weeks ago
16
hack ref_len -1
#76
andypexai
opened
4 months ago
0
Bug: off-by-one bug on bam reads
#75
andypexai
opened
4 months ago
1
Can't install latest pyd4 release
#74
cademirch
closed
3 weeks ago
1
Cut a new release please
#73
mrvollger
opened
12 months ago
5
[ENH] convert BED to d4 file.
#72
ghuls
opened
1 year ago
0
misaligned pointer dereference in `read_next_value`
#71
shinmao
opened
1 year ago
0
Bug: OSError: memory map must have a non-zero length in load_to_np_impl
#70
mrvollger
opened
1 year ago
1
d4tools stats - Show statistics across multiple regions
#69
pontushojer
opened
1 year ago
0
d4tools view - Flag `--region-file` not working.
#68
pontushojer
opened
1 year ago
0
Part size limit causing odd results every 10M bases?
#67
onordesjo
opened
1 year ago
0
Infer type in bamfile
#66
dotinspace
opened
1 year ago
1
fix bug with "~" option exclusive bam mask
#65
petersudmant
closed
1 year ago
2
no apparent size reduction of multi-track files as function of no of samples
#64
percyfal
opened
1 year ago
1
WIP: solidify start
#63
brentp
opened
1 year ago
5
Missing columns when merging multicolumn files depending on order
#62
mrvollger
closed
1 year ago
4
fixed a typo and clarified help message in d4tools view
#61
mrvollger
closed
1 year ago
1
Enable `create` to take input from stdin
#60
jdidion
opened
1 year ago
1
Bug in view? different values when including the first position in a chromosome
#59
mrvollger
closed
1 year ago
4
Does not compile on M1 mac
#58
jdidion
closed
1 year ago
4
Mapping quality filter not functioning
#57
toddrichmond
closed
1 year ago
2
create fails on some cram/bams
#56
petersudmant
closed
1 year ago
13
[enhancement] stat for a region/list of regions
#55
darked89
closed
1 year ago
5
Bug in encoding data with pyd4 when using sparse
#54
mrvollger
closed
2 years ago
2
Multitrack D4 from python API without writing multiple intermediate d4 files
#53
mrvollger
closed
2 years ago
2
`d4::task::Histogram::with_bin_range()` returning distribution that is missing `0`s
#52
pamelarussell
closed
2 years ago
9
`d4tools create` builds empty d4 file for small input files
#51
pamelarussell
closed
2 years ago
6
Maintainance of plotters
#50
AaronErhardt
closed
2 years ago
0
pyd4 manylinux wheel
#49
nathanweeks
opened
2 years ago
0
pip install fails
#48
tsackton
closed
2 years ago
2
Update README
#47
sstadick
closed
2 years ago
1
change tracking
#46
brentp
closed
2 years ago
7
Dockerfile no longer works with edition = "2021"
#45
udincer
opened
2 years ago
0
Add some basic stat options: count / sum
#44
af8
closed
1 year ago
1
exclude bam flag rather than include ?
#43
af8
closed
1 year ago
3
Build fails on CentOS7 : asks for -fPIC option
#42
af8
closed
2 years ago
7
Bug in build_htslib.sh?
#41
boboppie
closed
2 weeks ago
2
d4toh5.py used for manuscript?
#40
ivirshup
closed
2 years ago
3
Typo in page title - Quantatative
#39
bossiep1
closed
2 years ago
0
cargo build. => feature `edition2021` is required
#38
lindenb
closed
2 years ago
1
Expired SSL certificate causes d4-hts installation to fail
#37
ramprasadn
closed
2 years ago
3
d4tools is not on cargo, version numbers/releases?
#36
holmrenser
closed
2 years ago
1
Which d4utils version to use?
#35
javiercguard
opened
2 years ago
3
D4 file format magic number
#34
jmarshall
closed
2 years ago
2
Update README.md
#33
arq5x
closed
2 years ago
0
Next